View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18760_low_2 (Length: 328)
Name: NF18760_low_2
Description: NF18760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18760_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 27946031 - 27945724
Alignment:
| Q |
7 |
gaagagtgaacattctaacatagtaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctc |
106 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27946031 |
gaagagtgaacattctaacatagaaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctc |
27945932 |
T |
|
| Q |
107 |
aaaatttatcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctact-aacagtaa |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| || || | |||||||| |
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| T |
27945931 |
aaaatttatcattcttatgataattacatttccaatctctgtagggtctttaaaatttgataagatatctcaagttcaaaatgaatgtagtaaacagtaa |
27945832 |
T |
|
| Q |
206 |
actat-gtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaat |
304 |
Q |
| |
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||||| || |||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945831 |
actatcatcagtctcctataatagtgtgagctcaacaagtgagacattatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaat |
27945732 |
T |
|
| Q |
305 |
tatcatat |
312 |
Q |
| |
|
|||||||| |
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|
| T |
27945731 |
tatcatat |
27945724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 27548736 - 27549022
Alignment:
| Q |
15 |
aacattctaacatagtaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctcaaaattta |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
27548736 |
aacattctaacatagaaacaaaaagtaaacataggagctgcttgaaaagtataattcattgttattattcatcaaacaaaaaaagcattctcaaaattta |
27548835 |
T |
|
| Q |
115 |
tcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548836 |
tcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaactatgtcg |
27548935 |
T |
|
| Q |
215 |
gtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||| |
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| T |
27548936 |
gtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggccaaccattg |
27549022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 27437541 - 27437236
Alignment:
| Q |
7 |
gaagagtgaacattctaacatagtaacaaaaagtaaacataagagctgctttaaaagtgaaattcattgttattattcatcaaacaaaaaatgccttctc |
106 |
Q |
| |
|
|||||||||| ||| ||||||| |||||| | ||||||| ||||| ||| |||||| |||||||||| |||||||||||||| |||||||| | || |
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|
| T |
27437541 |
gaagagtgaaaattttaacataa-aacaaacaaaaaacataggagctacttgaaaagtcgaattcattgtcattattcatcaaacgaaaaatgcatagtc |
27437443 |
T |
|
| Q |
107 |
aaaatttatcattcttatgataattacatttccaatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaa |
206 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27437442 |
aaaatctatcatttttatgataattacatttcctatctctgtagggtctttacaatttgataagatgtctcatgttcaaaatggatctactaacagtaaa |
27437343 |
T |
|
| Q |
207 |
ctatgtcggtctcctacaatagtgtgagctttacaagcgagacgttatgtgctggaagacatcttcgttgtgaggaataggaaggccaaccattgaatta |
306 |
Q |
| |
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||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || | |
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|
| T |
27437342 |
ctatgccagtctccaacaatagtgtgagctttacaagcgagacattatgtgctggaagacatcttcggtgcaaggaataggaaggccaaccattggatga |
27437243 |
T |
|
| Q |
307 |
tcatatt |
313 |
Q |
| |
|
||||||| |
|
|
| T |
27437242 |
tcatatt |
27437236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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