View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18761_high_11 (Length: 251)
Name: NF18761_high_11
Description: NF18761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18761_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 31049148 - 31048920
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
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||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31049148 |
caggacatattcaacccaacactgcaatggatcccggacttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacagtca |
31049049 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31049048 |
acgactaatttcaacactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
31048949 |
T |
|
| Q |
220 |
cttgggttgaatgctgttcatatcactcg |
248 |
Q |
| |
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|||||||||||||||||| || ||||||| |
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| T |
31048948 |
cttgggttgaatgctgttaatgtcactcg |
31048920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 31144125 - 31143911
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||| |
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| T |
31144125 |
caggacatattcaacccaacagtgcaatagatccaggacttgtttatgatctagggattaaggattacttgaacttcttatgtgctgctggatacaatca |
31144026 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
| |
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| ||| || ||| |||| || | |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31144025 |
aaaactcatctcatcact---tattttcaacatgacattcacttgttatggaactcaaagcataaatgacttgaattacccttcaatcacattaccaaat |
31143929 |
T |
|
| Q |
220 |
cttgggttgaatgctgtt |
237 |
Q |
| |
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|||||||| ||||||||| |
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| T |
31143928 |
cttgggttaaatgctgtt |
31143911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 31161951 - 31161737
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||| |
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| T |
31161951 |
caggacatattcaacccaacagtgcaatagatccaggacttgtttatgatctagggattaaggattacttgaacttcttatgtgctgctggatacaatca |
31161852 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
| |
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| ||| || ||| |||| || | |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31161851 |
aaaactcatctcatcact---tattttcaacatgacattcacttgttatggaactcaaagcataaatgacttgaattacccttcaatcacattaccaaat |
31161755 |
T |
|
| Q |
220 |
cttgggttgaatgctgtt |
237 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
31161754 |
cttgggttaaatgctgtt |
31161737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 31244054 - 31243840
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
31244054 |
caggacatattcaacccaacagtgcaatagatccaggacttgtttatgatctagggattaaggattacttgaacttcttatgtgctgctggatacaatca |
31243955 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
| |
|
| ||| || ||| |||| || | |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31243954 |
aaaactcatctcatcact---tattttcaacatgacattcacttgttatggaactcaaagcataaatgacttgaattacccttcaatcacattaccaaat |
31243858 |
T |
|
| Q |
220 |
cttgggttgaatgctgtt |
237 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
31243857 |
cttgggttaaatgctgtt |
31243840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 31106879 - 31106678
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||||||||||||||| | || |||||||||||||||||||||||| |||||||||| || |
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|
| T |
31106879 |
caggacatattcgacccaacagtgccatggatccaggacttgtttatgatctagggattaaagattacttaaacttcttatgtgcttctggatacaacca |
31106780 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
| |
|
|| ||| ||||||||||| |||| |||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
31106779 |
acaactcatttcagcact---taatttcaacatgacatttacttgttcaggaactagtagcatagatgacttgaattatccttcaatcacattaccaaat |
31106683 |
T |
|
| Q |
220 |
cttgg |
224 |
Q |
| |
|
||||| |
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|
| T |
31106682 |
cttgg |
31106678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 31061545 - 31061334
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatgatctaagtgttgttgattacttaaacttcttatgtgctgctggatacaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||||||||||||||| | || ||||||||||||||||||||||| |||||||||| | |
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|
| T |
31061545 |
caggacatattcaacccaacagtgcaatagatcctggacttgtttatgatctagggattaaggattacttaaacttcttatgtgcctctggatacaacaa |
31061446 |
T |
|
| Q |
120 |
acgactaatttcagcactacttaatcccaacatgacatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaat |
219 |
Q |
| |
|
| ||| ||||||||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31061445 |
gcaactcatttcagcact---taatttcaacatgacatttacttgttcaggaactcatagtatagatgacttgaattacccttcaatcacattaccaaat |
31061349 |
T |
|
| Q |
220 |
cttgggttgaatgct |
234 |
Q |
| |
|
||||| || |||||| |
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|
| T |
31061348 |
cttggattaaatgct |
31061334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 31203378 - 31203472
Alignment:
| Q |
154 |
acatttacttgttcaggaattcatagcataaatgacttgaattacccttcaatcacattaccaaatcttgggttgaatgctgttcatatcactcg |
248 |
Q |
| |
|
||||||| |||||| ||| ||| ||||||| ||||| || ||||||||||||||||||||||||||| ||| || |||||| || ||||||| |
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| T |
31203378 |
acatttatttgttccggatctcacagcataacagacttcaactacccttcaatcacattaccaaatcttaagttaaacgctgttaatgtcactcg |
31203472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 37106155 - 37106107
Alignment:
| Q |
20 |
caggacatattcaacccaacagtgcaatggatccagggcttgtttatga |
68 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
37106155 |
caggacatgttcaaccaaacagtgcaatggatcctggtcttgtttatga |
37106107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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