View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18761_low_10 (Length: 293)

Name: NF18761_low_10
Description: NF18761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18761_low_10
NF18761_low_10
[»] chr6 (12 HSPs)
chr6 (16-119)||(34115256-34115359)
chr6 (214-283)||(34115454-34115523)
chr6 (217-283)||(34149756-34149822)
chr6 (217-283)||(34162372-34162438)
chr6 (18-78)||(34149474-34149534)
chr6 (18-78)||(34162090-34162150)
chr6 (214-283)||(34169583-34169652)
chr6 (82-119)||(34149520-34149557)
chr6 (82-119)||(34162136-34162173)
chr6 (82-116)||(34169429-34169463)
chr6 (218-278)||(34106598-34106658)
chr6 (214-278)||(34109482-34109546)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 34115256 - 34115359
Alignment:
Q  16 ttttttgtttgttttcaaaggctatgatgaatcattcattttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaag 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115256 ttttttgtttgttttcaaaggctatgatgaatcattcaatttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaag 34115355  T
Q  116 gcaa 119  Q
    ||||    
T  34115356 gcaa 34115359  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 34115454 - 34115523
Alignment:
Q  214 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115454 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatg 34115523  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 34149756 - 34149822
Alignment:
Q  217 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatg 283  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| ||||    
T  34149756 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatg 34149822  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 34162372 - 34162438
Alignment:
Q  217 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatg 283  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| ||||    
T  34162372 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatg 34162438  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 34149474 - 34149534
Alignment:
Q  18 ttttgtttgttttcaaaggctatgatgaatcattcattttttggagatactccaaacggag 78  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||| ||||    
T  34149474 ttttgtttgttttcaaaggctatgatgaatcaatcaattttaggagataccccaaaaggag 34149534  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 34162090 - 34162150
Alignment:
Q  18 ttttgtttgttttcaaaggctatgatgaatcattcattttttggagatactccaaacggag 78  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||| ||||    
T  34162090 ttttgtttgttttcaaaggctatgatgaatcaatcaattttaggagataccccaaaaggag 34162150  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 34169583 - 34169652
Alignment:
Q  214 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatg 283  Q
    |||||||||| |||||||| |||  |||||||||||| |||||||||||| |||| ||||||||| ||||    
T  34169583 gcgaagatgttacatgttgctgtcattgctgaaattcaaagcggcatgaaaaatgtgaagtgtgcatatg 34169652  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 34149520 - 34149557
Alignment:
Q  82 ataccccagaaggagatctttggcaaaatccaaggcaa 119  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34149520 ataccccaaaaggagatctttggcaaaatccaaggcaa 34149557  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 34162136 - 34162173
Alignment:
Q  82 ataccccagaaggagatctttggcaaaatccaaggcaa 119  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34162136 ataccccaaaaggagatctttggcaaaatccaaggcaa 34162173  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 34169429 - 34169463
Alignment:
Q  82 ataccccagaaggagatctttggcaaaatccaagg 116  Q
    |||||||| ||||||||||||||||||||||||||    
T  34169429 ataccccaaaaggagatctttggcaaaatccaagg 34169463  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 34106598 - 34106658
Alignment:
Q  218 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgc 278  Q
    |||||||||||| ||||||  | |||||||||  |||||||||||| || |||||||||||    
T  34106598 agatgtcacatgatgatgtcctagctgaaattaaaagcggcatgaaaaaggcgaagtgtgc 34106658  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 34109482 - 34109546
Alignment:
Q  214 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgc 278  Q
    ||||||||||| |||| ||||||  |||||||||||  |||||||||||| || ||||| |||||    
T  34109482 gcgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaactgtgc 34109546  T

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