View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18761_low_11 (Length: 258)

Name: NF18761_low_11
Description: NF18761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18761_low_11
NF18761_low_11
[»] chr2 (13 HSPs)
chr2 (1-53)||(9079786-9079838)
chr2 (169-247)||(28102274-28102352)
chr2 (169-247)||(27968467-27968545)
chr2 (169-247)||(28092042-28092120)
chr2 (169-242)||(10493383-10493456)
chr2 (169-242)||(10849935-10850008)
chr2 (184-242)||(10518841-10518899)
chr2 (169-242)||(10507942-10508015)
chr2 (169-242)||(10545597-10545670)
chr2 (172-242)||(10463885-10463955)
chr2 (169-242)||(10475078-10475151)
chr2 (194-242)||(7478124-7478172)
chr2 (206-242)||(10489347-10489383)


Alignment Details
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9079838 - 9079786
Alignment:
Q  1 atttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079838 atttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 9079786  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 28102352 - 28102274
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 247  Q
    ||||||||||| || ||||||||| || ||| | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28102352 ctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 27968467 - 27968545
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 247  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  27968467 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 28092120 - 28092042
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 247  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28092120 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 10493383 - 10493456
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||| || ||| ||||| |||||| | | |||||||||||||||||||||||||||||  |||||||    
T  10493383 ctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 10849935 - 10850008
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||| || ||||||||| ||||||   | |||||||||||||||||||||||||||||  |||||||    
T  10849935 ctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 10518841 - 10518899
Alignment:
Q  184 tgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||| ||| |||| ||||||||||||||||||||| |||||||||  |||||||    
T  10518841 tgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 10507942 - 10508015
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||| || ||||||||| ||||||  ||  ||||||||||||||||||||||| ||||  |||||||    
T  10507942 ctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 10545597 - 10545670
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||| || ||| ||||| |||||  | |||||||||||||||||||||||||| |||| ||| ||||    
T  10545597 ctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 10463885 - 10463955
Alignment:
Q  172 aagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    |||||||| || ||||||||| ||| || | |||||||| |||||||||||||| ||||| | ||||||||    
T  10463885 aagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 10475078 - 10475151
Alignment:
Q  169 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||| || ||| ||||| ||||||  ||  |||||||| |||||||||||||||||||  |||||||    
T  10475078 ctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 7478172 - 7478124
Alignment:
Q  194 ttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    |||||| | |||||||||||||||||||||| ||||||||  |||||||    
T  7478172 ttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 10489347 - 10489383
Alignment:
Q  206 aaagcttcagcaagtttatcgtccacctttgacacag 242  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10489347 aaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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