View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18761_low_3 (Length: 633)
Name: NF18761_low_3
Description: NF18761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18761_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 9323194 - 9322779
Alignment:
| Q |
14 |
atgaatgcactggttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcg |
113 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323194 |
atgaatgcactggttgc-gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcg |
9323096 |
T |
|
| Q |
114 |
cacacgagttagctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgc |
213 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323095 |
cacacgagttagctgcttcaaagaagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgc |
9322996 |
T |
|
| Q |
214 |
tggtgatgtggtaactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322995 |
tggtgatgtggtaactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaact |
9322896 |
T |
|
| Q |
314 |
ttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtg |
413 |
Q |
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| T |
9322895 |
ttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtg |
9322796 |
T |
|
| Q |
414 |
gctcatgctaactactt |
430 |
Q |
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| T |
9322795 |
gctcatgctaactactt |
9322779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 11423929 - 11424323
Alignment:
| Q |
14 |
atgaatgcactggttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcg |
113 |
Q |
| |
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|||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||| ||| |
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| T |
11423929 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtacta---ttgagcagattcttgacgccggtgtcttaggttatcgcg |
11424025 |
T |
|
| Q |
114 |
cacacgagttagctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgc |
213 |
Q |
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||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||| |
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| T |
11424026 |
caccagagttagctgcttccaagaagccaatgccttctttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgc |
11424125 |
T |
|
| Q |
214 |
tggtgatgtggtaactggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaac |
312 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11424126 |
tggtgatgtgataactggtgaggagggaggtgttg-atcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaac |
11424224 |
T |
|
| Q |
313 |
tttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctgg |
411 |
Q |
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|||||||| ||||||||||||||||||||||| |||| || ||| |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
11424225 |
tttgatgtcggaaatgggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatcggtttctgaaaggcctgg |
11424323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 429 - 616
Target Start/End: Complemental strand, 9322744 - 9322557
Alignment:
| Q |
429 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccannnnnnncttggtgtacaacacattcatggctagcacatggtt |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
9322744 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccatttttttcttggtgtaaaacacattcatggctagcacatggtt |
9322645 |
T |
|
| Q |
529 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaagtacaagagatgaaagattgtaca |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322644 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaagtacaagagatgaaagattgtaca |
9322557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 119 - 375
Target Start/End: Complemental strand, 32304523 - 32304267
Alignment:
| Q |
119 |
gagttagctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtg |
218 |
Q |
| |
|
|||||| ||||||| ||| || ||||||||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||| |||| |||||| ||| |
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| T |
32304523 |
gagttaactgcttccaagaagacaatgccttccttcaagtcagatgtctttgttttcggtgtgatgctttttgaacttttaaccggaaggtgtgcttgtg |
32304424 |
T |
|
| Q |
219 |
atgtggtaactggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttga |
317 |
Q |
| |
|
||||| ||||| | ||||||||||||||| ||||| |||||||| || || || |||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
32304423 |
atgtgataactagtgaggagggaggtgttg-atcttgcagattggctaagactgtgagtagcagaaggtcgagtctcggaatgttttgatgcaactttga |
32304325 |
T |
|
| Q |
318 |
tgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagt |
375 |
Q |
| |
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||| |||||||||||||| ||||||||| |||| || ||| |||||| |||||||||| |
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| T |
32304324 |
tgtcagaaatgggaaatctagttgtagaaaagggaatgaaggaggtcataggaatagt |
32304267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 250 - 395
Target Start/End: Complemental strand, 9330972 - 9330826
Alignment:
| Q |
250 |
atcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaa |
348 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||| || |
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| T |
9330972 |
atcttacagattggctaagattgcgagtagcataaggtcgaggctccgaatgtttcgatgcagctttgacgttagaaatgggaaatctaattgtagaaaa |
9330873 |
T |
|
| Q |
349 |
ggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcgg |
395 |
Q |
| |
|
|| || |||||||||| ||||||||| |||||||| |||| |||||| |
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| T |
9330872 |
gggaatgaatgaggtcctaggaatagcgattcgatatatttgatcgg |
9330826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 493 - 608
Target Start/End: Complemental strand, 9330698 - 9330583
Alignment:
| Q |
493 |
cttggtgtacaacacattcatggctagcacatggttgaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgtttgcaa |
592 |
Q |
| |
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||||||||| | ||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
9330698 |
cttggtgtaaagcacatacattgctagcacatggttgaatatgtccatttaattttgtcttaaaatggtaatgtgtcatgaaatgttcatttgtttgcaa |
9330599 |
T |
|
| Q |
593 |
gtacaagagatgaaag |
608 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
9330598 |
gtacaagagatgaaag |
9330583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 429 - 588
Target Start/End: Original strand, 11424415 - 11424573
Alignment:
| Q |
429 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccannnnnnncttggtgtacaacacattcatggctagcacatggtt |
528 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || || ||||| ||| ||||| || |
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| T |
11424415 |
ttggtatcatcccatatttgtttagagcatggctttttaacatgtttgtattaaccaatttttg-ttaatgtaaagcagatacatgggtagtacatgatt |
11424513 |
T |
|
| Q |
529 |
gaatatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcatttgttt |
588 |
Q |
| |
|
| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
11424514 |
ggatatgaccatttgattttgtcttaaaatgggaatgtgtcatgaaatgatcatttgttt |
11424573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 11425636 - 11425708
Alignment:
| Q |
297 |
aatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttagg |
369 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||||||||| |||| || ||| |||||| |||| |
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| T |
11425636 |
aatgttttgatgctactttgatgttagaaatggggaatccagttgtagaaaagggaatgaaggaggtcctagg |
11425708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 584
Target Start/End: Original strand, 11425916 - 11425969
Alignment:
| Q |
531 |
atatgaccatttaattttgacttaaaatgataatgtgtcatgaaatgatcattt |
584 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
11425916 |
atatgaccatttgattttgtcttaaaatgggaatgtgtcatgaaatgatcattt |
11425969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 9330791 - 9330754
Alignment:
| Q |
429 |
ttggtaccatcccatatttgtttagagcatggcttttt |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
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| T |
9330791 |
ttggtaccatcccatatttgtttagagcatgacttttt |
9330754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 11425803 - 11425856
Alignment:
| Q |
429 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaa |
482 |
Q |
| |
|
|||||| |||| | ||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
11425803 |
ttggtatcatctcgtatttgtttagggcatggctttttaagatgtctgtattaa |
11425856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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