View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18761_low_4 (Length: 448)

Name: NF18761_low_4
Description: NF18761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18761_low_4
NF18761_low_4
[»] chr2 (4 HSPs)
chr2 (195-312)||(16295-16412)
chr2 (193-250)||(18990697-18990754)
chr2 (193-222)||(16877302-16877331)
chr2 (193-222)||(16989435-16989464)
[»] chr5 (1 HSPs)
chr5 (193-352)||(22753804-22753962)
[»] chr7 (1 HSPs)
chr7 (193-254)||(10868181-10868242)
[»] chr4 (3 HSPs)
chr4 (249-352)||(22677295-22677398)
chr4 (193-230)||(10670258-10670295)
chr4 (193-230)||(10883897-10883934)
[»] scaffold0290 (2 HSPs)
scaffold0290 (193-259)||(17143-17209)
scaffold0290 (193-259)||(4127-4193)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 16295 - 16412
Alignment:
Q  195 taatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataaatgttcatgagattcacttatggcgaggaatgttttaagatgca 294  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||| | |||||||  ||||| ||| |||||||| | ||||||    
T  16295 taatatcccactcgttagttattggaatattaccagccgaacgtatcagaggataaatgtttaggagattcttttatgacgaagaatgtttaatgatgca 16394  T
Q  295 atgtcggtaactacacgc 312  Q
    |||||||||| |||||||    
T  16395 atgtcggtaattacacgc 16412  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 18990697 - 18990754
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataa 250  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  18990697 tgtaatatcccactcgtcagttgttggaatattaccagccgaacgtatcagaggataa 18990754  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 16877302 - 16877331
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaat 222  Q
    ||||||||||||||||||||||||||||||    
T  16877302 tgtaatatctcactcgtcagttattggaat 16877331  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 16989435 - 16989464
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaat 222  Q
    ||||||||||||||||||||||||||||||    
T  16989435 tgtaatatctcactcgtcagttattggaat 16989464  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 193 - 352
Target Start/End: Complemental strand, 22753962 - 22753804
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataaatgttcatgagattcacttatggcgaggaatgttttaagatg 292  Q
    ||||| ||| ||||||||||| |||||||| | | ||| |||| ||  |||| || ||||||||| |||||||| ||||| | |||||||||||| ||||    
T  22753962 tgtaacatcccactcgtcagt-attggaatttcatcagtcgaatgtaccagaggacaaatgttcacgagattcatttatgacaaggaatgttttatgatg 22753864  T
Q  293 caatgtcggtaactacacgcatgttcagtaattagtatcaagttacgcgtgtttaagatg 352  Q
    |||| |||||| ||||| | ||||||||| ||  ||||||||||| ||||||||||||||    
T  22753863 caatttcggtagctacatgtatgttcagttatcggtatcaagttaggcgtgtttaagatg 22753804  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 10868242 - 10868181
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataaatgt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  10868242 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtaccagaggataaatgt 10868181  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 22677398 - 22677295
Alignment:
Q  249 aaatgttcatgagattcacttatggcgaggaatgttttaagatgcaatgtcggtaactacacgcatgttcagtaattagtatcaagttacgcgtgtttaa 348  Q
    ||||||||||  |||||| ||||| | | |||||||| | |||||||||||||||  |||||||| ||||||| || | |||||||||| | ||||||||    
T  22677398 aaatgttcatcggattcatttatgaccatgaatgtttaatgatgcaatgtcggtagttacacgcaggttcagttatcaatatcaagttaggtgtgtttaa 22677299  T
Q  349 gatg 352  Q
    ||||    
T  22677298 gatg 22677295  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 10670295 - 10670258
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccag 230  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10670295 tgtaatatcccactcgtcagttattggaatattaccag 10670258  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 10883934 - 10883897
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccag 230  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  10883934 tgtaatatcccactcgtcagttattggaatattaccag 10883897  T

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Target: scaffold0290 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 17143 - 17209
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataaatgttcatg 259  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||||| ||||| ||||| | ||||||    
T  17143 tgtaatatcccactcgttagttgttggaatattaccagccgaacgtatcagaggataagtattcatg 17209  T

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Target: scaffold0290; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 4127 - 4193
Alignment:
Q  193 tgtaatatctcactcgtcagttattggaatattaccagccgaacgtctcagaagataaatgttcatg 259  Q
    ||||||||| |||||||||| | ||||||||||||||| ||||||| | ||| ||||| | ||||||    
T  4127 tgtaatatcccactcgtcagatgttggaatattaccagtcgaacgtattagaggataagtattcatg 4193  T

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