View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_high_10 (Length: 335)
Name: NF18762_high_10
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 4115017 - 4115309
Alignment:
| Q |
20 |
atgacaactgaagtgaatataacgtatagagagcacacgtctaatgatgctttacacattttggataaaattgcaaagatcgagcaaaattttagcagga |
119 |
Q |
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| T |
4115017 |
atgacaactgaagtgaatataacgtatagagagcacacgtctaatgatgctttagacattttggataaaattgcaataatcgagcaaaattttagcagga |
4115116 |
T |
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| Q |
120 |
atccttgcaatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattagatttaagattcaacatagttgatggtgtgtc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |
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| T |
4115117 |
atccttgcaatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaag------------tttaagattgaacatagttggtggtgtgtc |
4115204 |
T |
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| Q |
220 |
gttgccgttgacctgtcaagtgtgagtaaatgactttcatgttagatataaatgaacatgaacatcatataagtaaggtgactacatatttttggtgagg |
319 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4115205 |
attgccgttgatgtgtcaagtgtgagtaaataactttcatgttagatataaacgaacatgaacatcatataagtaaggtgactacatatttttgttgaga |
4115304 |
T |
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