View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18762_high_14 (Length: 227)
Name: NF18762_high_14
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_high_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 15797676 - 15797902
Alignment:
| Q |
1 |
taatgtttgaagtaatgtaatatcagatcaaatatgtggtagaacttgctcgtgcgctagcgaaaatgcctggagtatatagagttgatctatttacacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15797676 |
taatgtttgaagtaatgtaatatcagatcaaatatgtggtagaacttgctcgtgcgctagcgaaaatgcctggagtatatagagttgatctatttacacg |
15797775 |
T |
|
| Q |
101 |
ccaaatctcgtcaccagaagttgattggagctacggggaacctacagaaatgcttaccgcaggtgcagatgatgacgacaacattggggaaagcagtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15797776 |
ccaaatctcgtcaccagaagttgattggagctacggggaacctacagaaatgcttaccgcaggtgcagatgatgacgacaacattggggaaagcagtggt |
15797875 |
T |
|
| Q |
201 |
gcatatatcataagaataccattcggt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15797876 |
gcatatatcataagaataccattcggt |
15797902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 39810319 - 39810449
Alignment:
| Q |
24 |
cagatcaaatatgtggtagaacttgctcgtgcgctagcgaaaatgcctggagtatatagagttgatctatttacacgccaaatctcgtcaccagaagttg |
123 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||||| | | || ||||||||||| ||||| || || |||||||| || || || || ||| |
|
|
| T |
39810319 |
cagattaaatatgtggtagaacttgctcgtgcacttgcgaaaacggcaggggtatatagagtagatctcttcacgcgccaaatatcatctcctgatattg |
39810418 |
T |
|
| Q |
124 |
attggagctacggggaacctacagaaatgct |
154 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |
|
|
| T |
39810419 |
attggagctatggagaacctacagaaatgct |
39810449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University