View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18762_low_1 (Length: 704)

Name: NF18762_low_1
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18762_low_1
NF18762_low_1
[»] chr1 (9 HSPs)
chr1 (175-481)||(38139252-38139558)
chr1 (20-110)||(38139074-38139164)
chr1 (29-110)||(7892238-7892320)
chr1 (355-443)||(45985223-45985305)
chr1 (666-699)||(38116859-38116892)
chr1 (189-243)||(7892452-7892507)
chr1 (666-704)||(38160684-38160722)
chr1 (26-107)||(40036212-40036294)
chr1 (51-107)||(32574588-32574645)
[»] chr8 (2 HSPs)
chr8 (223-443)||(4618280-4618497)
chr8 (39-108)||(4296448-4296523)
[»] chr4 (3 HSPs)
chr4 (666-704)||(49004661-49004699)
chr4 (244-308)||(4230213-4230277)
chr4 (561-619)||(49003257-49003315)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 175 - 481
Target Start/End: Original strand, 38139252 - 38139558
Alignment:
Q  175 ctgggtcaggcgtgtttttgaatgtcacttgttgcataatctcttatcatttgttatttgtgtctaaaatttacatttgcctagtaggaacccccacatt 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139252 ctgggtcaggcatgtttttgaatgtcacttgttgcataatctcttatcatttgttatttgtgtctaaaatttacatttgcctagtaggaacccccacatt 38139351  T
Q  275 tacagaagttatatttgccaaatgccaatgttattatattagcatatactgtaaatattatacctaggtaattaaactggacaggacattgaaacaggag 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139352 tacagaagttatatttgccaaatgccaatgttattatattagcatatactgtaaatattatacctaggtaattaaactggacaggacattgaaacaggag 38139451  T
Q  375 ggaggtatcagttcaagttataaatgtctgacgggtgtcatgttactagtatatttttatttttaattactagtttatacacccgacgttgtccggatta 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38139452 ggaggtatcagttcaagttataaatgtctgacgggtgtcatgttactagtatatttttatttttaattactagtttatacacccgacgttgtccagatta 38139551  T
Q  475 gacatat 481  Q
    |||||||    
T  38139552 gacatat 38139558  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 38139074 - 38139164
Alignment:
Q  20 ggcaggccgtttctttttcgtttttatgctatgattactgtgtcttgtgtgaatacttgattttgtaagcagcaaatttccggacctgctg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139074 ggcaggccgtttctttttcgtttttatgctatgattactgtgtcttgtgtgaatacttgattttgtaagcagcaaatttccggacctgctg 38139164  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 7892238 - 7892320
Alignment:
Q  29 tttctttttcgtttttatgctatgattactgtgtcttgtgtgaatactt-gattttgtaagcagcaaatttccggacctgctg 110  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||| || ||||| | |||||||    
T  7892238 tttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttggattttgtaagcagaaagtttccaggcctgctg 7892320  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 45985223 - 45985305
Alignment:
Q  355 acaggacattgaaacaggagggaggtatcagttcaagttataaatgtctgacgggtgtcatgttactagtatatttttatttttaatta 443  Q
    |||||||||||||||||| |||||||| | ||||||||     | |||| |||||||||||||||||||||||| ||||||||||||||    
T  45985223 acaggacattgaaacagg-gggaggtacctgttcaagt-----aggtctaacgggtgtcatgttactagtatatgtttatttttaatta 45985305  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 699
Target Start/End: Original strand, 38116859 - 38116892
Alignment:
Q  666 tgcaatgaatttgaagagaaactgattatgtgag 699  Q
    ||||||||||||||||||||||||||||||||||    
T  38116859 tgcaatgaatttgaagagaaactgattatgtgag 38116892  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 7892452 - 7892507
Alignment:
Q  189 tttttgaatgtcacttgttgcataat-ctcttatcatttgttatttgtgtctaaaa 243  Q
    |||||||||||||| || |||||||| |||| |||||||||||||| |||||||||    
T  7892452 tttttgaatgtcacatgctgcataatgctctgatcatttgttatttttgtctaaaa 7892507  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 666 - 704
Target Start/End: Original strand, 38160684 - 38160722
Alignment:
Q  666 tgcaatgaatttgaagagaaactgattatgtgagatatg 704  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  38160684 tgcaatgaatttgaagagaaactgattatgcgagttatg 38160722  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 40036212 - 40036294
Alignment:
Q  26 ccgtttctttttcgtttttatgctatgattactgtgtcttgtgtgaatactt-gattttgtaagcagcaaatttccggacctg 107  Q
    |||||||||||| |||| |||||||||| || | ||||| |||||||||||| |||| | |||||||||| |||  |||||||    
T  40036212 ccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagtttatggacctg 40036294  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 32574588 - 32574645
Alignment:
Q  51 tgattactgtgtcttgtgtgaatacttg-attttgtaagcagcaaatttccggacctg 107  Q
    |||||| ||||||| | ||||||||||| |||||||||||||||| |||| |||||||    
T  32574588 tgattattgtgtctagcgtgaatacttggattttgtaagcagcaagtttctggacctg 32574645  T

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Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 223 - 443
Target Start/End: Complemental strand, 4618497 - 4618280
Alignment:
Q  223 atttgttatttgtgtctaaaatttacatttgcctagtaggaacccccacatttacagaagttatatttgccaaatgccaatgttattatattagcatata 322  Q
    ||||||||||  ||||||||||||||||||||  |||||||||||||| |||||||| |||||| |||||| ||||||||||||||   ||||| ||||     
T  4618497 atttgttattcttgtctaaaatttacatttgctaagtaggaacccccaaatttacagcagttatctttgcctaatgccaatgttat---attagtatatg 4618401  T
Q  323 ctgta--aatattatacctaggtaattaaactggacaggacattgaaacaggagggaggtatcagttcaagttataaatgtctgacgggtgtcatgttac 420  Q
       |   ||||||||||| |||||||||||  | || ||||||||||||||| ||||| || |||||||||||| ||| ||||||||| |||||||||||    
T  4618400 tgattcgaatattataccaaggtaattaaatggtacgggacattgaaacagg-gggagataccagttcaagttacaaaggtctgacgg-tgtcatgttac 4618303  T
Q  421 tagtatatttttatttttaatta 443  Q
    |||||||||||||||||||||||    
T  4618302 tagtatatttttatttttaatta 4618280  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 4296523 - 4296448
Alignment:
Q  39 gtttttatgctatg--attactgtgtcttgt---gtgaatacttg-attttgtaagcagcaaatttccggacctgc 108  Q
    ||||||||||||||  |||||||||||| ||   ||||||||||| |||||||||||||||| ||||| |||||||    
T  4296523 gtttttatgctatgtgattactgtgtctagtagtgtgaatacttggattttgtaagcagcaagtttccagacctgc 4296448  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 666 - 704
Target Start/End: Original strand, 49004661 - 49004699
Alignment:
Q  666 tgcaatgaatttgaagagaaactgattatgtgagatatg 704  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  49004661 tgcaatgaatttgaagagaaactgattatgtgagttatg 49004699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 4230277 - 4230213
Alignment:
Q  244 tttacatttgcctagtaggaacccccacatttacagaagttatatttgccaaatgccaatgttat 308  Q
    |||||||||||  |||||||| ||||| |||||||| |||||| || ||||||||||| ||||||    
T  4230277 tttacatttgctaagtaggaaaccccaaatttacagtagttattttggccaaatgccattgttat 4230213  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 619
Target Start/End: Original strand, 49003257 - 49003315
Alignment:
Q  561 gctctttgactctgctgcattccttctcttctcttacaagtttgagactccaacaatca 619  Q
    ||||||| |||||||| || ||||| |||||||| |||| || ||||||||||||||||    
T  49003257 gctctttcactctgctacaatccttttcttctctcacaacttggagactccaacaatca 49003315  T

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