View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_10 (Length: 356)
Name: NF18762_low_10
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18351925 - 18351783
Alignment:
| Q |
1 |
acaaagggtcgattgaaaggaatttttatgaggtaaggatattt--aattttttgtgattttcttataataaaaagtcaacaaggagtaataataatata |
98 |
Q |
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| T |
18351925 |
acaaagggtcgattgaaaggaatttttatgaggtaaggatatttttaattttttgtgattttcttatagtaaaaagtcaacaaggagtaataataatata |
18351826 |
T |
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| Q |
99 |
taaaagaattaaatttatttaccaacataaagattagcatgag |
141 |
Q |
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| T |
18351825 |
taaaagaattaaatttatttaccaacataaagattagcatgag |
18351783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 18346974 - 18346865
Alignment:
| Q |
133 |
tagcatgagatggaccgactctaagtaattctagaaaatatagtgtctaccataattttgaatagcatctgccagaccgaggctatatattttaaagaaa |
232 |
Q |
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| T |
18346974 |
tagcatgagatggaccgactctaagtaattctagaaaatatagtgtctaccataattttgaatagcatctgccagaccgaggctatatattttaaagaaa |
18346875 |
T |
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| Q |
233 |
aacaaaggct |
242 |
Q |
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| T |
18346874 |
aataaaggct |
18346865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 32034898 - 32034816
Alignment:
| Q |
258 |
gtgagccaagccgactctaaacggacattagtagtgtcggtgttgggggccgacgctaaaaatggaggctaatatgctgtttt |
340 |
Q |
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| T |
32034898 |
gtgagctaagccgactctaaatagacgctagtagcgtcggtgtcggtggccgacgctaaaattggaggctaaaatgcagtttt |
32034816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 12840091 - 12840045
Alignment:
| Q |
286 |
tagtagtgtcggtgttgggggccgacgctaaaaatggaggctaatat |
332 |
Q |
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| T |
12840091 |
tagtagcgtcggtgtcgggggccgacgctaaaattggaggctaatat |
12840045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 9396208 - 9396273
Alignment:
| Q |
253 |
atagagtgagccaagccgactctaaacggacattagtagtgtcggtgttgggggccgacgctaaaa |
318 |
Q |
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| T |
9396208 |
atagagtgggctaagccgactctaaaccgacattagtagcgtcggtgttaggggccgacgctaaaa |
9396273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 3738098 - 3738023
Alignment:
| Q |
265 |
aagccgactctaaacggacattagtagtgtcggtgttgggggccgacgctaaaaatggaggctaatatgctgtttt |
340 |
Q |
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| T |
3738098 |
aagccgactctaaccggacgctactagcgtcggtgtcggcggccgacactaaaattggaggctaaaatgcagtttt |
3738023 |
T |
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