View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_13 (Length: 317)
Name: NF18762_low_13
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10283834 - 10284130
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10283834 |
ctcaggagccactttaggattcaaatttgaaccaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctcctgcataatgtctcagc |
10283933 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10283934 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccagttgcttaatcctg |
10284033 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284034 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaag |
10284130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10243010 - 10243306
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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| T |
10243010 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10243109 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
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||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
10243110 |
tttttcacataaggttccattgcaccagtcatgatcccttgaacatacttaacattaggaaaaagctctggtatcagtccataccaattgctcaatccta |
10243209 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10243210 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagttttgacattgcagttctaatggatggatgtgtgattctactgctaag |
10243306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10264895 - 10265176
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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| T |
10264895 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagcaccatattcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10264994 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
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||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||| |||||| |
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| T |
10264995 |
tttttcaagtaatgttccattgaacctgtcatgattcctagaacatacttaacattaggaaaaagttctggtatcaatccataccaatcgctcaatccta |
10265094 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgt |
282 |
Q |
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| T |
10265095 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagtttagacatagcagttctaatggatggatgtgt |
10265176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10272592 - 10272888
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| ||||||| ||||||| | |
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| T |
10272592 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaccaaaggaacctctcctgcatagtgtctcaac |
10272691 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |
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| T |
10272692 |
tttttcaagtaatgttccattgaacctgtcatgatccctagaagatacttagcattagggaaaagctccggtatcaatccataccaattgctcaatccta |
10272791 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaag |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10272792 |
tgcatttcttgtggatcaagttagctagttcaggatttggtgtcagcagtttagacatagcagttctaatgaatggatgtgtgattctactgctaag |
10272888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 297
Target Start/End: Original strand, 13979838 - 13979987
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||| ||||||||||| | || ||| ||||| |||||||| | || ||||| ||| ||||||||||| | |
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| T |
13979838 |
tacttcgcattaggaaacaactctggtaacaaaccataccaattattcaaccctagacattttttgtggattatgtcagctaattctggatttggtttga |
13979937 |
T |
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| Q |
246 |
gcaattttgacatagcagttctaatggatggatgtgtgattctactgctaag |
297 |
Q |
| |
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||||||| ||||||| ||| ||| ||||||| ||||| |||||| ||||| |
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| T |
13979938 |
gcaatttagacatag--attcgaatcgatggatctgtgactctactactaag |
13979987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 273
Target Start/End: Complemental strand, 48367773 - 48367646
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
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||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| | |||||||| | ||| |||| ||| ||||||||||| | |
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| T |
48367773 |
tactttgcattcggaaaaagctccggtatcaaaccataccagttgcttaatcctatacatcttttgtggattatgttcgctaattctggatttggtttga |
48367674 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatgga |
273 |
Q |
| |
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||||||| ||||||||||||| |||||| |
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|
| T |
48367673 |
gcaatttagacatagcagttcgaatgga |
48367646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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