View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_14 (Length: 312)
Name: NF18762_low_14
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 19856172 - 19856469
Alignment:
| Q |
1 |
tatactcacatcctcattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856172 |
tatactcacatcctcattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagca |
19856271 |
T |
|
| Q |
101 |
gttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856272 |
gttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgctt |
19856371 |
T |
|
| Q |
201 |
ccttcacaatgcattgcaagtaacacattttttgaacatcagcatcattgataactttggaatttccaacaacacggtaaatttcttcttgtactttt |
298 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19856372 |
ccttcacaatgcactgtaagtaacacattttttgaacatcagcatcagtgataactttggaatttccaacaacacggtaaatttcttcttgtgctttt |
19856469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8748466 - 8748312
Alignment:
| Q |
1 |
tatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatag |
98 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
8748466 |
tatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatag |
8748367 |
T |
|
| Q |
99 |
cagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaa |
153 |
Q |
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|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
8748366 |
cagttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaa |
8748312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 39427882 - 39428039
Alignment:
| Q |
1 |
tatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatag |
98 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||||| |
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| T |
39427882 |
tatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccatag |
39427981 |
T |
|
| Q |
99 |
cagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacg |
156 |
Q |
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|
|||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
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|
| T |
39427982 |
cagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaacg |
39428039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 35081055 - 35080901
Alignment:
| Q |
1 |
tatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatag |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
35081055 |
tatactcacttcctcattcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatag |
35080956 |
T |
|
| Q |
99 |
cagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaa |
153 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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|
| T |
35080955 |
cagttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaa |
35080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 32830370 - 32830523
Alignment:
| Q |
3 |
tactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| || |
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| T |
32830370 |
tactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccatacca |
32830469 |
T |
|
| Q |
101 |
gttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaa |
154 |
Q |
| |
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|||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
32830470 |
gttgtacctttcggaacatgcttctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
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