View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_15 (Length: 301)
Name: NF18762_low_15
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 15798212 - 15797924
Alignment:
| Q |
13 |
tcatcatcttatacattgaattgatatcttccttcgattggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcac |
112 |
Q |
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| T |
15798212 |
tcatcatcttatacattgaattgatatcttccttcgactggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcac |
15798113 |
T |
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| Q |
113 |
catcggtacatttaaagcgcccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccg |
212 |
Q |
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| T |
15798112 |
catcggtacatttaaagcacccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccg |
15798013 |
T |
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| Q |
213 |
acttgttcacccaatgcttttgacatattgagaatatgtgttaatgctccatcaacaaactcttgaacatatggccaaagaagctcttt |
301 |
Q |
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| T |
15798012 |
acttgttcacccaatgcttttgacatattgagaatatgtgttaatgctccatccacaaactcttgaacatatggccaaagaagctcttt |
15797924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 39810841 - 39810575
Alignment:
| Q |
13 |
tcatcatcttatacattgaattgatatcttccttcgattggcgtccttgcttaagaagttgttcgagcttgtttcttccaagcgaatgaccggtcagcac |
112 |
Q |
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| T |
39810841 |
tcattatcttatacgttgaattgatatcctcccaagattggcgcccttgcttaagaagttgttctagtttgtttcttccaagtgaatgaccagtgagaac |
39810742 |
T |
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| Q |
113 |
catcggtacatttaaagcgcccgaaagaatagcagcactatctccggcatcagcgtaatgtccgtgaatcacatacggccaaacaggttgacctccaccg |
212 |
Q |
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| T |
39810741 |
cattggcacattcaaagcacctgaaagaagagcagcactgtcaccagcatcagcatagtgtccatgaatcacataaggccacacaggttgtccaccgcca |
39810642 |
T |
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| Q |
213 |
acttgttcacccaatgcttttgacatattgagaatatgtgttaatgctccatcaacaaactcttgaa |
279 |
Q |
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| T |
39810641 |
acttgttcacccaatacttttgacatgttgagaatgtgagctaaggctccatctacaaattcttgaa |
39810575 |
T |
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