View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18762_low_16 (Length: 250)

Name: NF18762_low_16
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18762_low_16
NF18762_low_16
[»] chr3 (5 HSPs)
chr3 (41-233)||(26023596-26023789)
chr3 (60-169)||(6868153-6868261)
chr3 (72-161)||(48777029-48777118)
chr3 (97-208)||(19711162-19711282)
chr3 (3-41)||(26023454-26023492)
[»] chr7 (5 HSPs)
chr7 (49-157)||(23422600-23422708)
chr7 (65-202)||(3660379-3660515)
chr7 (112-197)||(619567-619652)
chr7 (93-169)||(329919-329998)
chr7 (44-200)||(3660590-3660746)
[»] chr2 (5 HSPs)
chr2 (51-157)||(45366772-45366875)
chr2 (49-169)||(21234925-21235045)
chr2 (136-182)||(1634995-1635041)
chr2 (96-161)||(1635050-1635115)
chr2 (150-202)||(32657445-32657497)
[»] chr6 (4 HSPs)
chr6 (51-169)||(9685045-9685163)
chr6 (107-208)||(11849947-11850048)
chr6 (51-91)||(11931316-11931356)
chr6 (106-162)||(18764316-18764372)
[»] chr1 (3 HSPs)
chr1 (93-157)||(14385634-14385698)
chr1 (109-184)||(11608823-11608898)
chr1 (148-204)||(1281463-1281519)
[»] chr8 (4 HSPs)
chr8 (66-204)||(12217242-12217379)
chr8 (60-161)||(45003588-45003688)
chr8 (72-116)||(10578197-10578241)
chr8 (100-136)||(34825261-34825297)
[»] chr5 (6 HSPs)
chr5 (49-127)||(16043656-16043734)
chr5 (45-125)||(36047916-36047996)
chr5 (106-157)||(8132207-8132257)
chr5 (106-182)||(411571-411647)
chr5 (68-136)||(18293839-18293907)
chr5 (65-113)||(40438609-40438657)
[»] chr4 (6 HSPs)
chr4 (107-161)||(56276243-56276297)
chr4 (96-205)||(19266570-19266679)
chr4 (97-204)||(16547117-16547224)
chr4 (66-125)||(20047086-20047145)
chr4 (46-158)||(22839864-22839977)
chr4 (70-139)||(27048789-27048858)
[»] scaffold0229 (1 HSPs)
scaffold0229 (148-204)||(7471-7527)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 26023596 - 26023789
Alignment:
Q  41 tcattgatagtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcac 140  Q
    |||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26023596 tcatcgatagtgtaaaacctttttacacgtgcatccaatcaaatcatgtcacgtggatatttgtagacatattttaggaactaacctataaaagtggcac 26023695  T
Q  141 tatggtgtgatttgattggatggatgtgtt-ataatgttttacactgtcagtgtatacaaattaatctctttgatatatacatgctggtatttt 233  Q
    |||||| ||||||||||||||| ||||||| | || ||||||| | |||| |||||||||||||||||||||||||||||||||| | ||||||    
T  26023696 tatggtatgatttgattggatgcatgtgttaaaaaagttttacgccgtcaatgtatacaaattaatctctttgatatatacatgcggatatttt 26023789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 6868153 - 6868261
Alignment:
Q  60 ttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattgg 159  Q
    |||| ||||||||| | ||||||||||  |||| | ||||||||| |||||||||||| ||||||||||| |||||||| |||| |||||||||||| ||    
T  6868153 tttttacacatgcaacgaatcaaatcacctcacatagatatttgttgagatattttagaaactaacctat-aaagtggccctatagtgtgatttgatcgg 6868251  T
Q  160 atggatgtgt 169  Q
    ||| ||||||    
T  6868252 atgcatgtgt 6868261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 48777118 - 48777029
Alignment:
Q  72 catctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggat 161  Q
    |||| |||||||| ||| || || | ||||| |||||||| ||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  48777118 catcaaatcaaattatgccatgtaggtatttttagagataatttaggaacaaacttataaaagtggcactttcgtgtgatttgattggat 48777029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 19711162 - 19711282
Alignment:
Q  97 atatttgtagagatattttaggaactaacctataaaag---------tggcactatggtgtgatttgattggatggatgtgttataatgttttacactgt 187  Q
    |||||| | |||||||||||||||||||||||||||||         || |||| ||||||||||||||||||||  ||| | | ||||||||||||  |    
T  19711162 atatttttcgagatattttaggaactaacctataaaagaagtgtcactgccactttggtgtgatttgattggatgcgtgtctaaaaatgttttacaccat 19711261  T
Q  188 cagtgtatacaaattaatctc 208  Q
    || || ||| |||||||||||    
T  19711262 caatgcatagaaattaatctc 19711282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 26023454 - 26023492
Alignment:
Q  3 ttcaatttgtgatatcatacaactaatcttaaaatatat 41  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  26023454 ttcaatttgtgatatcatacaactaattataaaatatat 26023492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 23422600 - 23422708
Alignment:
Q  49 agtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgt 148  Q
    |||||||||| |||||||||||||| | | ||||||||||||| || | ||||||| | |||||||||||| ||||| |||||||||| |||| ||||||    
T  23422600 agtgtaaaactttttcacacatgcagccattcaaatcatgtcatgtaggtatttgtggggatattttaggagctaacatataaaagtgacactttggtgt 23422699  T
Q  149 gatttgatt 157  Q
    || ||||||    
T  23422700 gacttgatt 23422708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 202
Target Start/End: Complemental strand, 3660515 - 3660379
Alignment:
Q  65 acacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatgga 164  Q
    |||||||||||  ||||||||||| ||  | ||||| ||||||||||||||||||||||||||| ||||||||||  || | |||||||||||| ||| |    
T  3660515 acacatgcatcctatcaaatcatgacaaattgatatatgtagagatattttaggaactaaccta-aaaagtggcatcattgagtgatttgattgaatgca 3660417  T
Q  165 tgtgttata-atgttttacactgtcagtgtatacaaatt 202  Q
    |||| |||| | |||||||| |||||||||||| |||||    
T  3660416 tgtg-tatagaagttttacattgtcagtgtatataaatt 3660379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 619567 - 619652
Alignment:
Q  112 ttttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttacactgtcagtgtatac 197  Q
    ||||||||||| || ||| || |||||| |||| ||||||||||||| ||| |||||| | || |||||||| |||||||||||||    
T  619567 ttttaggaacttacatattaatgtggcattatgatgtgatttgattgaatgcatgtgtgaaaaagttttacagtgtcagtgtatac 619652  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 329998 - 329919
Alignment:
Q  93 gtggatatttgtagagat---attttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgt 169  Q
    |||||||||||||||| |   |||||||||||| || ||| || |||||| |||| ||||||||||||||||| ||||||    
T  329998 gtggatatttgtagaggtggtattttaggaacttacatattaatgtggcattatgatgtgatttgattggatgcatgtgt 329919  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 3660746 - 3660590
Alignment:
Q  44 ttgatagtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactat 143  Q
    |||| |||||||||| |||| || ||||||| |||| | |||||||||  | ||||||| ||   || |||||||||||||| |  ||||||||||  ||    
T  3660746 ttgacagtgtaaaacttttttactcatgcatgtaattatatcatgtcaaatagatatttttaactatgttttaggaactaactttaaaaagtggcatcat 3660647  T
Q  144 ggtgtgatttgattggatggatgtgttataatgttttacactgtcagtgtatacaaa 200  Q
     | ||||||||||| | |  |||||| | | ||||||||||| |  |||||||||||    
T  3660646 tgagtgatttgattagttacatgtgtaaaattgttttacactattggtgtatacaaa 3660590  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 45366772 - 45366875
Alignment:
Q  51 tgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtga 150  Q
    |||||||| |||||| ||||||||| |||||||| | |||| ||  | |||||| ||||||||||| ||||||||||||||||| ||||||||||||| |    
T  45366772 tgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgt--aaatttgtggagatattttatgaactaacctataaaagcggcactatggtgtaa 45366868  T
Q  151 tttgatt 157  Q
    |||||||    
T  45366869 tttgatt 45366875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 21234925 - 21235045
Alignment:
Q  49 agtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgt 148  Q
    ||||||||||   |||||| ||||||| |||||||||| | ||||| ||||||||| |||| |||| |||||||||||||||| || | |||  | | ||    
T  21234925 agtgtaaaactcgttcacatatgcatccaatcaaatcacgccacgtagatatttgtcgagacatttgaggaactaacctataatagagacacattagcgt 21235024  T
Q  149 gatttgattggatggatgtgt 169  Q
    |||||||||||||| ||||||    
T  21235025 gatttgattggatgcatgtgt 21235045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 1635041 - 1634995
Alignment:
Q  136 ggcactatggtgtgatttgattggatggatgtgttataatgttttac 182  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||||    
T  1635041 ggcactatggtgtgatttgattggatgcatgtgtaaaaatgttttac 1634995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 1635050 - 1635115
Alignment:
Q  96 gatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggat 161  Q
    ||||||||| |||| ||||||||||| ||| ||  ||||||||||||| ||||||||| |||||||    
T  1635050 gatatttgtggagacattttaggaaccaacttaagaaagtggcactatcgtgtgatttaattggat 1635115  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 32657445 - 32657497
Alignment:
Q  150 atttgattggatggatgtgttataatgttttacactgtcagtgtatacaaatt 202  Q
    ||||||||||||| |||||||| || ||||||||||||| | |||||||||||    
T  32657445 atttgattggatgcatgtgttaaaacgttttacactgtcggcgtatacaaatt 32657497  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 169
Target Start/End: Complemental strand, 9685163 - 9685045
Alignment:
Q  51 tgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtga 150  Q
    |||||||| |||  ||||||||||  |||||||||| |  | || ||||||| | |||||||||||| ||||||| ||||||||| ||||||| || |||    
T  9685163 tgtaaaacttttctacacatgcattcaatcaaatcaagatatgtagatatttctggagatattttagaaactaacttataaaagtagcactatagtatga 9685064  T
Q  151 tttgattggatggatgtgt 169  Q
    |||||||||||| ||||||    
T  9685063 tttgattggatgcatgtgt 9685045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 11849947 - 11850048
Alignment:
Q  107 agatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttacactgtcagtgtatacaaattaatc 206  Q
    |||||||||| |||||||||||||||| ||||| | | |||||||||||||||| | |||| | | || ||||||||  || |||| |||||||||| ||    
T  11849947 agatattttaagaactaacctataaaaatggcattttcgtgtgatttgattggacgtatgtctaaaaaggttttacatcgtaagtgcatacaaattagtc 11850046  T
Q  207 tc 208  Q
    ||    
T  11850047 tc 11850048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 11931356 - 11931316
Alignment:
Q  51 tgtaaaaccttttcacacatgcatctaatcaaatcatgtca 91  Q
    |||||||| |||| ||||||||||||||| |||||||||||    
T  11931356 tgtaaaacatttttacacatgcatctaattaaatcatgtca 11931316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 18764316 - 18764372
Alignment:
Q  106 gagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatg 162  Q
    ||||||||||||||||||||| | |||| ||| |||||  ||||||||| |||||||    
T  18764316 gagatattttaggaactaaccaacaaaaatggaactatcatgtgatttgcttggatg 18764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 14385698 - 14385634
Alignment:
Q  93 gtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgatt 157  Q
    |||||||||| | |||| |||| ||||||||| |||||||||||||| |||||||||||||||||    
T  14385698 gtggatatttttggagaaatttcaggaactaagctataaaagtggcattatggtgtgatttgatt 14385634  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 11608823 - 11608898
Alignment:
Q  109 atattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttacac 184  Q
    ||||||||||||||||| ||  ||||||  | ||| |||||||||||||||||  |||||||| ||||||||||||    
T  11608823 atattttaggaactaacataccaaagtgtaattatagtgtgatttgattggatctatgtgttaaaatgttttacac 11608898  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 1281463 - 1281519
Alignment:
Q  148 tgatttgattggatggatgtgttataatgttttacactgtcagtgtatacaaattaa 204  Q
    ||||||||||||||| |||||| | ||   |||||||||| ||||||||||||||||    
T  1281463 tgatttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaa 1281519  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 12217379 - 12217242
Alignment:
Q  66 cacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggat 165  Q
    ||||||||| |||  |||||||  || || ||||||| ||| ||||||||| ||||| ||||||||| ||||||   | | ||||||||||| |||| ||    
T  12217379 cacatgcatgtaactaaatcataccaagtagatatttttagggatattttatgaacttacctataaaggtggcatcttagagtgatttgattcgatgcat 12217280  T
Q  166 gtgttataatgttttacactgtcagtgtatacaaattaa 204  Q
    |||| | || ||| ||||||||| |||||||||||||||    
T  12217279 gtgtaagaaagttctacactgtc-gtgtatacaaattaa 12217242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 45003688 - 45003588
Alignment:
Q  60 ttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattgg 159  Q
    |||| |||| ||| || |||||||||| | || || | ||||| | ||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||    
T  45003688 tttttacacttgcctccaatcaaatcacgccatgtaggtatttatggagatattttaggaattaacctat-aaagtggcattatggtgcgatttgattgg 45003590  T
Q  160 at 161  Q
    ||    
T  45003589 at 45003588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10578241 - 10578197
Alignment:
Q  72 catctaatcaaatcatgtcacgtggatatttgtagagatatttta 116  Q
    ||||||||||||||||| |||||  |||||||| |||||||||||    
T  10578241 catctaatcaaatcatgccacgtaaatatttgtggagatatttta 10578197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 34825261 - 34825297
Alignment:
Q  100 tttgtagagatattttaggaactaacctataaaagtg 136  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  34825261 tttgtggagatattttaggaactaacctatgaaagtg 34825297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 16043734 - 16043656
Alignment:
Q  49 agtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacct 127  Q
    ||||||||||||||| ||||||| || |||||||||||||  | ||  |||| |||||||||||||| |||||||||||    
T  16043734 agtgtaaaacctttttacacatgtatttaatcaaatcatgctaagtatatatgtgtagagatattttgggaactaacct 16043656  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 36047916 - 36047996
Alignment:
Q  45 tgatagtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaac 125  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||  |  | ||||| |||||||||| ||| | |||||||    
T  36047916 tgatggtgtaaaaccattttacacatgcatctaatcaaatcatgctaaatagatatctgtagagatacttttgaaactaac 36047996  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 8132257 - 8132207
Alignment:
Q  106 gagatattttaggaactaacctataaaagtggcactatggtgtgatttgatt 157  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||||||||||||    
T  8132257 gagatattttagaaactaacttataaaagt-gcactatgatgtgatttgatt 8132207  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 411571 - 411647
Alignment:
Q  106 gagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttac 182  Q
    |||||||| ||||| |||||| |  ||||||||||||| |||||||||||| | ||| |||||| | || |||||||    
T  411571 gagatattgtaggatctaacccaagaaagtggcactatagtgtgatttgatagaatgcatgtgtaaaaaagttttac 411647  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 18293839 - 18293907
Alignment:
Q  68 catgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtg 136  Q
    |||||||  ||||||||||| |||||| ||||||| |  | || ||| |||||||||||||||||||||    
T  18293839 catgcattcaatcaaatcatatcacgtagatattttttaaaatgtttcaggaactaacctataaaagtg 18293907  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 40438609 - 40438657
Alignment:
Q  65 acacatgcatctaatcaaatcatgtcacgtggatatttgtagagatatt 113  Q
    ||||||||||| |||||||||||||||  | |||||||||||| |||||    
T  40438609 acacatgcatccaatcaaatcatgtcaaatagatatttgtagaaatatt 40438657  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 56276243 - 56276297
Alignment:
Q  107 agatattttaggaactaacctataaaagtggcactatggtgtgatttgattggat 161  Q
    |||||||||||||||||||| |||||| || |||||| |||||||||| ||||||    
T  56276243 agatattttaggaactaaccaataaaaatgtcactattgtgtgatttggttggat 56276297  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 19266570 - 19266679
Alignment:
Q  96 gatatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttacactgtcagtgtat 195  Q
    ||||||||| ||||||||| || ||||||| | ||||||||||||| | |||  ||||||||||||  |||||| | || ||||||||| ||  ||| ||    
T  19266570 gatatttgtggagatatttaagtaactaacttgtaaaagtggcactttcgtgcaatttgattggatacatgtgtaaaaaagttttacaccgtaggtgcat 19266669  T
Q  196 acaaattaat 205  Q
    | ||||||||    
T  19266670 aaaaattaat 19266679  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 204
Target Start/End: Complemental strand, 16547224 - 16547117
Alignment:
Q  97 atatttgtagagatattttaggaactaacctataaaagtggcactatggtgtgatttgattggatggatgtgttataatgttttacactgtcagtgtata 196  Q
    ||||||||  ||||||| || || ||| |||| |||||||||||||| | |||||||| ||||||| ||| ||   || |||||||||||||  || |||    
T  16547224 atatttgtgaagatattataagagctatcctacaaaagtggcactatagagtgatttggttggatgcatgcgtaggaaagttttacactgtcgatgcata 16547125  T
Q  197 caaattaa 204  Q
    ||||||||    
T  16547124 caaattaa 16547117  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 20047145 - 20047086
Alignment:
Q  66 cacatgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaac 125  Q
    |||||||||| |||||| ||||| ||  |||||||||| || ||||||||||||||||||    
T  20047145 cacatgcatccaatcaagtcatgccaaatggatatttgaagggatattttaggaactaac 20047086  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 22839864 - 22839977
Alignment:
Q  46 gatagtgtaaaaccttttcacacatgcatctaatcaaatcatgtcacgtggatatttgtagagat-attttaggaactaacctataaaagtggcactatg 144  Q
    ||||||||||||| |  | |||| |||||  |||||||||| |||| || |||||||||  |||| ||||||  ||||| || | |||| ||||||||||    
T  22839864 gatagtgtaaaacttaattacacgtgcatacaatcaaatcacgtcatgtagatatttgtgaagattattttaaaaactagcccacaaaaatggcactatg 22839963  T
Q  145 gtgtgatttgattg 158  Q
     |||||||||||||    
T  22839964 atgtgatttgattg 22839977  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 27048789 - 27048858
Alignment:
Q  70 tgcatctaatcaaatcatgtcacgtggatatttgtagagatattttaggaactaacctataaaagtggca 139  Q
    |||||| ||||||||||| ||| || |||| || |||||||||| ||| |||||||||| ||| ||||||    
T  27048789 tgcatccaatcaaatcatatcaagtagatagttttagagatattatagaaactaacctaaaaaggtggca 27048858  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 7471 - 7527
Alignment:
Q  148 tgatttgattggatggatgtgttataatgttttacactgtcagtgtatacaaattaa 204  Q
    ||||||||||||||| |||||| | ||   |||||||||| ||||||||||||||||    
T  7471 tgatttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaa 7527  T

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