View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_2 (Length: 554)
Name: NF18762_low_2
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Original strand, 40207099 - 40207622
Alignment:
| Q |
9 |
agcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatcagaaacagtgttaactcctcct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207099 |
agcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatcagaaacagtgttaactcctcct |
40207198 |
T |
|
| Q |
109 |
ttgtacctgttgtagtatgatgtttggaacccctttgcaagtccagcaccacaaattgctcctaaacattgtgcaactatgtataggaatgcccttatta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207199 |
ttgtacctgttgtagtatgatgtttggaacccctttgcaagtccagcaccacaaattgctcctaaacattgtgcaactatgtataggaatgcccttatta |
40207298 |
T |
|
| Q |
209 |
aagacaccttgcgtcccacaaatagcccaaaggtcacagccggattaatgtgtcctcctacaattatttaatattaccaaattaattaatttcaatttaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40207299 |
aagacaccttgcgtcccacaaatagcccaaaggtcacagccggattaatgtgtcctcctacaattatttaatattaccaaattaattaatttcaattaaa |
40207398 |
T |
|
| Q |
309 |
aatatacatacacaacacaacacaagttttgagaataagtccaattttgacttatgtaaccaatgttcgcaattgaacattatttttcaattaattttct |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
40207399 |
aatatacatacacaacacaacacaagttttgagaataagtccaattttgacttatgtaaccaatgtttgcaattgcacattatttttcaattaattttct |
40207498 |
T |
|
| Q |
409 |
ttttaagttgtataaaaagttaagagtgaaaaacaaacgaacaatctctggttgaaactgattacactgacgttcaatgaaaatacactaacattatgca |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |
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| T |
40207499 |
ttttaagttgtataaaaagttaagagtgaaaaacaaacgaacaatctctggttgaaaccggttacactgacgttcaatgaaaatacactaacactatgca |
40207598 |
T |
|
| Q |
509 |
acaattttttctaaattgtacata |
532 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
40207599 |
acaattttttctaaattgtacata |
40207622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 21793857 - 21793780
Alignment:
| Q |
10 |
gcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatca |
87 |
Q |
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|||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| |
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| T |
21793857 |
gcagagaagacagtgtagacaagaacaaaggtaccaatgatttcagcacctaaagctgtgcctttgttgtagccatca |
21793780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 55221005 - 55220931
Alignment:
| Q |
9 |
agcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaacc |
83 |
Q |
| |
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|||||||||||||||||| ||||| ||||| || || || ||||||||||||| |||| ||||||||||||||| |
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| T |
55221005 |
agcagagaaaacagtgtaaaccaacacaaaagttccgatcatttcagcacctagggcagagcctttgctgtaacc |
55220931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42796568 - 42796516
Alignment:
| Q |
10 |
gcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaa |
62 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||| ||| ||||||||||| |
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| T |
42796568 |
gcagagaaaacggtgtaaaccaaaacaaaggtaccaacaatctcagcacctaa |
42796516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 40835165 - 40835422
Alignment:
| Q |
10 |
gcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagcacctaaagcagtgcctttgctgtaaccatca-gaaacagtgttaactcctcct |
108 |
Q |
| |
|
|||||||| || ||||| || | ||||||||| ||||| |||||||||||||| |||| |||||||| |||||| || |||| ||||| | || ||| |
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| T |
40835165 |
gcagagaacacggtgtaaacaagaacaaaggttccaattatttcagcacctaacccagttcctttgctataaccagcacttaaca-tgttagcaccacct |
40835263 |
T |
|
| Q |
109 |
ttgtacctgttgtagtatgatgtttggaacccctttgcaagtccagcaccacaaattgctcctaaacattgtgcaactatgtataggaatgcccttatta |
208 |
Q |
| |
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|||||||| || ||||| | | || || |||| | |||||| ||||||| |||||||||||||| || || || ||||||| | || || || | |
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| T |
40835264 |
ttgtacctattatagtaacctttctgaaaagccttaaccagtccaacaccacatattgctcctaaacactgagctaccatgtataatacagctctaatca |
40835363 |
T |
|
| Q |
209 |
aagacaccttgcgtcccacaaatagcccaaaggtcacagccggattaatgtgtcctcct |
267 |
Q |
| |
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| |||||||| | ||| |||||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
40835364 |
atgacaccttcctcgccagaaatagcccaaatgtcaccgccggatttatgtgtcctcct |
40835422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 41037379 - 41037332
Alignment:
| Q |
9 |
agcagagaaaacagtgtagaccaaaacaaaggtaccaataatttcagc |
56 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| ||| ||||| |
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| T |
41037379 |
agcagagaaaacagtgtagacaagaacaaaggtaccaacaatctcagc |
41037332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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