View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_3 (Length: 546)
Name: NF18762_low_3
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 43657947 - 43658408
Alignment:
| Q |
11 |
cacagacaaagaggtgatgttttttaattctatcacaaaatcatggcataattttccatctatggaatatgctagatatcttcccgtgttaggagtcact |
110 |
Q |
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| T |
43657947 |
cacacacaaagaggtgatgttttttaattctatcacaaaatcatggcataatatgccatctatggaatatgctagatatcttcccgtgttaggagtcact |
43658046 |
T |
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| Q |
111 |
gaggatcatgttattccttacaagtgttcatcttatattaatagaaaggaatatgttagacaaagaagaagtgagcattcaactttaagcttaaagggca |
210 |
Q |
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| T |
43658047 |
gaggatcatgttattccttacaagtgttcatcttatattaatagaaaggaatatgttagacaaagaagaagtgagcattcaactttaagcttaaagggca |
43658146 |
T |
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| Q |
211 |
ttaaaaaatcattttgactgattcatggcgctctggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttggg |
310 |
Q |
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| T |
43658147 |
ttaaaaaatcatttttactgattcatggcgctctggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttggg |
43658246 |
T |
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| Q |
311 |
atagctttatctggaactgtttgtggcagcatgttttatgttaactgagggcctgaaaggagtgaaaagcttgtagcgtatgacatagaaaaaggttttt |
410 |
Q |
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| T |
43658247 |
atagctttatctggaactgtttgtggcagcatgttttatgttaactgggggcctgaagggagtgaaaagcttgtagcgtatgacatagaaaaagattttt |
43658346 |
T |
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| Q |
411 |
ggattgcaatacaaacatatctac----cattcctacctgatttacgtggatatcgcactta |
468 |
Q |
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| T |
43658347 |
ggattgcaatacaaacatatctaccattcattcctacctgatttacgtggatatcgcactta |
43658408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 10367963 - 10368036
Alignment:
| Q |
367 |
aaggagtgaaaagcttgtagcgtatgacatagaaaaaggtttttggattgcaatacaaacatatctaccattcc |
440 |
Q |
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| T |
10367963 |
aaggaatgaaaagcttgcagcatatgacatagaaagaggtttttggattgtaattcaaacatctcaaccattcc |
10368036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 352
Target Start/End: Complemental strand, 54155389 - 54155282
Alignment:
| Q |
245 |
ggagaaatatacgattctttaacaaataaatggactgaaatacaaacactgcctgtgaattttgggatagctttatctggaactgtttgtggcagcatgt |
344 |
Q |
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| T |
54155389 |
ggagaaatatatgattctatctccaataaatggactgaaatcccaagactgccttttgattttgggattgcttgttctggagttgtatgtggcaagatgt |
54155290 |
T |
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| Q |
345 |
tttatgtt |
352 |
Q |
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|||||||| |
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| T |
54155289 |
tttatgtt |
54155282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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