View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18762_low_5 (Length: 505)
Name: NF18762_low_5
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_5 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 12637426 - 12637904
Alignment:
| Q |
13 |
aatatatcaggatatcaaaaaagactactaaagtctaaaagagataatttgatagcatcaatcgcaaggttttaaattgtggttgcgtcgcaatctttga |
112 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12637426 |
aatatatcaggatttcaaaaaagactactaaagtctaaaagagataatttgttggcatcaatcacaaggttttaaattgtggttgcgtcgcaatctttga |
12637525 |
T |
|
| Q |
113 |
tattgcaataatcaagaatctgaatcgtgattatatcgtgtttgctgatacaccaaaaaccttgatatgtcgcggcctatggaaaacattannnnnnnca |
212 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
12637526 |
tattgcaataatcaagaatctgaatcgtgattatatcgtgttttctaatacaccaaaaaccttgatatgtcgcggcctatggaaaacgttatttttttca |
12637625 |
T |
|
| Q |
213 |
aaaggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637626 |
aaaggcttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaac |
12637725 |
T |
|
| Q |
313 |
atctaccagatcttcctctacttcaccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12637726 |
atctaccagatcttcctctacttcgccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc |
12637825 |
T |
|
| Q |
413 |
aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaac |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12637826 |
aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaac |
12637904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 219 - 491
Target Start/End: Original strand, 12610626 - 12610904
Alignment:
| Q |
219 |
ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac |
318 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||| | |||||||||||||| |||||| ||||||| ||||| |
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| T |
12610626 |
ttattatccttaccaggattatagacttgatattgttatcagttaaacatatatcttggttgctgtcattaccaccttggaattttagaagaacgtctac |
12610725 |
T |
|
| Q |
319 |
cagatcttcctctacttcacc------ttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc |
412 |
Q |
| |
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||||||||| ||| || |||| ||| |||||||||||||| ||||||||||||||| ||| |||||| ||| ||| |||||||||| |||||| |
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| T |
12610726 |
cagatcttcttcttctccaccttgactttcatttgcttttgactttgcttctttatgttcagtgacaatgttttctagtatttgatcaatttgcctatgc |
12610825 |
T |
|
| Q |
413 |
aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaac |
491 |
Q |
| |
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|| ||| | ||||| ||| ||||| ||||| ||||||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
12610826 |
aacctctccagtttaggcctcaaaccggaaacacgttgaagccatttcgctgaaggaaataattcagctatgtcaaaac |
12610904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 491
Target Start/End: Complemental strand, 15885422 - 15885144
Alignment:
| Q |
219 |
ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac |
318 |
Q |
| |
|
||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||| ||| ||||||| | || ||| ||||| ||||||| || || |
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| T |
15885422 |
ttattatccttactaggagtacagccttgatgttgttgtcagttaagcatatatctttttcattatcattgcgacgttggtattttagaagaacgtcaac |
15885323 |
T |
|
| Q |
319 |
cagatcttcctctacttcacctt------cttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgc |
412 |
Q |
| |
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|| |||||| ||| |||| ||| ||||||||||||| || ||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||| |
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| T |
15885322 |
caaatcttcttctgcttcttcttggcattcttttgcttttgaatttgcttctttatgttcaatgatgatgttttctagtattcgatcaatacgtctatgc |
15885223 |
T |
|
| Q |
413 |
aatacctcaattttagacctgaaaccagaaactagttgaagccatttagctgaaggaaacaattcacctatgtcaaaac |
491 |
Q |
| |
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|| ||||| ||||| ||| ||||| ||||| ||||||| |||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
15885222 |
aacctctcaagtttaggcctcaaaccggaaacaagttgaatccatttagatgaaggaaacagttcacctatgtcaaaac |
15885144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 414
Target Start/End: Original strand, 62762 - 62960
Alignment:
| Q |
219 |
ttattatacttaccaggattatagccttgatattgttgtcagttaagcatatatcttggtcaatatcattaccaccttgaaatttttgaagaacatctac |
318 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||| || ||| ||||||||||||| | |||| |||||| ||||| ||| ||||||| ||||| |
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|
| T |
62762 |
ttattatacttaccaagagtatagccttaatattgttgttggtcaaggatatatcttggtcgctgtcatcaccaccctgaaactttagaagaacgtctac |
62861 |
T |
|
| Q |
319 |
cagatcttcctctac---ttcaccttcttttgcttttgacttagcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaa |
414 |
Q |
| |
|
||||||||| || | || ||||||||| ||||| |||| ||||||||||||| | ||| ||||||| | | ||| |||||| |||||||||||| |
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| T |
62862 |
cagatcttctgcttcagtttgtccttctttttcttttaactttgcttctttatgttgaatgacgatgttttcaagtatctgatcaagttgtctatgcaa |
62960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 491
Target Start/End: Complemental strand, 5768 - 5636
Alignment:
| Q |
359 |
gcttctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatt |
458 |
Q |
| |
|
||||||||||| ||||||||||||||| | | ||| ||||| |||||| ||| | | ||||| |||| ||| ||||||| |||| |||| ||||||| |
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|
| T |
5768 |
gcttctttatgctcattgatgatgttttcaagtatttgatcagtttgtcgatgaagcatctcaagcttaggcctcaaaccagtaacttgttgtagccatt |
5669 |
T |
|
| Q |
459 |
tagctgaaggaaacaattcacctatgtcaaaac |
491 |
Q |
| |
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|||| || |||||||| || || | |||||||| |
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| T |
5668 |
tagcagatggaaacaaatctcccaagtcaaaac |
5636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 491
Target Start/End: Original strand, 23039798 - 23039927
Alignment:
| Q |
362 |
tctttatgttcattgatgatgtttactaatataagatcaatttgtctatgcaatacctcaattttagacctgaaaccagaaactagttgaagccatttag |
461 |
Q |
| |
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|||||||| ||||||||||||||| ||||||| ||||| |||||| ||| || ||||| |||| ||| | ||||| ||| || || | |||||||| |
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| T |
23039798 |
tctttatgctcattgatgatgttttctaatatctgatcagtttgtcgatgaaacctctcaagcttaggcctcataccagtaacaagctgtaaccatttag |
23039897 |
T |
|
| Q |
462 |
ctgaaggaaacaattcacctatgtcaaaac |
491 |
Q |
| |
|
|||| |||||||| || || | |||||||| |
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|
| T |
23039898 |
ctgagggaaacaaatctcccaagtcaaaac |
23039927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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