View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18762_low_8 (Length: 393)
Name: NF18762_low_8
Description: NF18762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18762_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 26328385 - 26328020
Alignment:
| Q |
11 |
cagagacataagctatagatttggtgatatctgagggagtgtagacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26328385 |
cagagacataagctatagatttggtgatatctgagggagtgtatacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
26328286 |
T |
|
| Q |
111 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26328285 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
26328186 |
T |
|
| Q |
211 |
gtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagcatatataagtaaaagagaaaggaaacactaataaaggaagactaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26328185 |
gtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagcatatataagtaaaagagaaagcaaacactaataaaggaagactaaa |
26328086 |
T |
|
| Q |
311 |
atatgcatttaataaatagtatggaacactaataaagcaaacactaataatgtggtgatttcaatg |
376 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26328085 |
atatgcatttaataaatagtaaggaacactaataaagcaaacactaataatgtggtgatttcaatg |
26328020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 26336096 - 26335842
Alignment:
| Q |
11 |
cagagacataagctatagatttggtgatatctgagggagtgtagacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcc |
110 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||| |||||||||| ||| |||| || | | ||||||| ||||| ||||||| |||||||| |
|
|
| T |
26336096 |
cagagacataagcaatagaattggtgatatctgagagagtatagacatttttttggatgacttggttgaaggaatcaatttgggttgtcatatttggtca |
26335997 |
T |
|
| Q |
111 |
tgtagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtga |
210 |
Q |
| |
|
|| |||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| | || ||| |||||| |||||| |
|
|
| T |
26335996 |
tgaagaaaatgtatcaaatacacctgtaccaccatatgcaaagttcatcccatacttcaaatcatgttcaggcactatgttgttataccataatttgtga |
26335897 |
T |
|
| Q |
211 |
gtgattggtgatttcaatcccaaatacttggctgcacaatataaaagaggaagca |
265 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
26335896 |
atgattggtgatctcaatcccaaatactttgctgcacaacatataagaggaagca |
26335842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 26323077 - 26322841
Alignment:
| Q |
13 |
gagacataagctatagatttggtgatatctgagggagtgtagacattttcttgaatgagtttgattaaggaattgatttgtgttgtcacatttggtcctg |
112 |
Q |
| |
|
||||||||||| |||| |||| ||| |||||| ||||| |||||||||||||||||||||| | | ||||||| |||||| | ||||| ||||||||||| |
|
|
| T |
26323077 |
gagacataagcaatagctttgctgagatctgaaggagtatagacattttcttgaatgagttggttgaaggaatcgatttgggctgtcatatttggtcctg |
26322978 |
T |
|
| Q |
113 |
tagaagatatttcaaatacacctgtaccaccataggcaaagttcatcccatacttcaaatcatgcttaggcactgtattagtattccataaattgtgagt |
212 |
Q |
| |
|
|| | || | |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||| ||| | | |||| || ||||||| |
|
|
| T |
26322977 |
aagtaaatgtatcaaatacacctgtgccaccatatgcaaagttcatcccatacttcaaataatgtttagacac------aatgttcctgaatttgtgagg |
26322884 |
T |
|
| Q |
213 |
gattggtgatttcaatcccaaatacttggctgcacaatataaa |
255 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
26322883 |
gattggtgatctcaatctcaaatacttggctgcaccatataaa |
26322841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University