View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_high_10 (Length: 376)
Name: NF18763_high_10
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 30345494 - 30345851
Alignment:
| Q |
1 |
aaataaaatgaatggaaggagaatgaagcatgaggaaattgtgaagttgttggtcatttctcaaccaagaaaatcttatgaatagtatttgtggtggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30345494 |
aaataaaatgaatggaaggagaatgaagcatgaggaaattgtgaagttgttggtcatttctcaaccaagaaaatcttatgaatagtatttgtggtggata |
30345593 |
T |
|
| Q |
101 |
aaacatgaacggtagcattgtattgatgccttggtgatcaagacaaatatgaatattgataggtagagtggtccatttgaatttaatgtgctttttctta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30345594 |
aaacatgaacggtagcattgtattgatgccttggtgatcaagacaaatatgaatattgataggtagagtggtccaaatgaatttaatgtgctttttctta |
30345693 |
T |
|
| Q |
201 |
tttaggtacaagtggccagagttacgtgggaataggga-tttcaaatcagaacaatttaagcaaccttatcacaannnnnnnngtccatcactttataca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30345694 |
tttaggtacaagtggccagagttacgtgggaatagggattttcaaatc--aacaatttaagcaaccttatcacaattttttttgtccatcactttataca |
30345791 |
T |
|
| Q |
300 |
tgtcataaattttgatgaggtttcatttcatctatttaatgtctatgaaaagacatagat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30345792 |
tgtcataaattttgatgaggtttcatttcatctatttaatgtctatgaaaagacatagat |
30345851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University