View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_11 (Length: 362)
Name: NF18763_high_11
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 45549783 - 45550107
Alignment:
| Q |
11 |
cagagaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttgg |
110 |
Q |
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| T |
45549783 |
cagagaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttgg |
45549882 |
T |
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| Q |
111 |
ctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatctgtaagccaacaaatcgaagtattaatctctatg |
210 |
Q |
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| T |
45549883 |
ctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatgtcttttctttcatctgtaagccaacaaatcaaagtattaatctctatg |
45549982 |
T |
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| Q |
211 |
taaataatccgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaacaatgaatgagtctatttaaaatagtactctga |
310 |
Q |
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| T |
45549983 |
taaataatctgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaacaatgaatgagtctatttaaaatagtactctga |
45550082 |
T |
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| Q |
311 |
tatattgatacataatgaagagtct |
335 |
Q |
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| T |
45550083 |
catattgatacataatgaagagtct |
45550107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 45544093 - 45544253
Alignment:
| Q |
15 |
gaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctca |
114 |
Q |
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| T |
45544093 |
gaagtgtggcgcaaactgatcatggcttccagcagcagaagggtattcaatgtcagtaacaaatggctggatttttgtttcagtggtaggatttggttca |
45544192 |
T |
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| Q |
115 |
tcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcat |
175 |
Q |
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| T |
45544193 |
tcatcatgcacattcattctctcaagagattcctcaagcggtgtaatgtcttttgtttcat |
45544253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 45544996 - 45545154
Alignment:
| Q |
15 |
gaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctca |
114 |
Q |
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| T |
45544996 |
gaagtgtggcacaaactgatcatggcttttaacatcagaagggtattcagtgtcagcaacatatgactggatttttggttctgtggtaggttttgac--- |
45545092 |
T |
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| Q |
115 |
tcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatc |
176 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||| | || |||||| ||||||| |
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| T |
45545093 |
tcgtcatgcacattcattctctcaagagattcctcgagtggtgttatgtcttttatttcatc |
45545154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 45550199 - 45550325
Alignment:
| Q |
47 |
cagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattc |
146 |
Q |
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| T |
45550199 |
cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcat---catgcacattcattctctcgagagattc |
45550295 |
T |
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| Q |
147 |
ctcaagtggtttaatctcttttctttcatc |
176 |
Q |
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||| |||||| |||| |||||| ||||||| |
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| T |
45550296 |
ctcgagtggtgtaatgtcttttatttcatc |
45550325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 45548859 - 45549008
Alignment:
| Q |
11 |
cagagaagtgtggcacaaactgatcat------ggcttccaacagcaggagggtattcagt---gtcagtaacagatggctggatatttcgttctgtggt |
101 |
Q |
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|||||| ||||||||||||||||||| |||||||| || ||||||||||||||| ||||| ||||| ||||||||| ||| |||||||||| |
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| T |
45548859 |
cagagaggtgtggcacaaactgatcaatatcacggcttccagaagaaggagggtattcagtactgtcagcaacaggtggctggatttttggttctgtggt |
45548958 |
T |
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| Q |
102 |
aggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtg |
154 |
Q |
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| T |
45548959 |
aggttttggc---tcatcatgcacattcattctctctagagattcctcaagtg |
45549008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 45544297 - 45544344
Alignment:
| Q |
229 |
catgggaagctaacaagagtaaatttcacattttatcttaactccaaaa |
277 |
Q |
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| T |
45544297 |
catgggaagctaacaagagtaaatctcaca-tttaacttaactccaaaa |
45544344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 45549548 - 45549586
Alignment:
| Q |
297 |
aaatagtactctgatatattgatacataatgaagagtct |
335 |
Q |
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| T |
45549548 |
aaatagtacactgatatattgatacataatgaggagtct |
45549586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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