View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_14 (Length: 324)
Name: NF18763_high_14
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 30040818 - 30041079
Alignment:
| Q |
46 |
caccacccagctgggacaaatcagatgacccttgtggagcaccttgggaaggagtaacctgcaataaatcaagggttacttcattgtaatatatataaat |
145 |
Q |
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| T |
30040818 |
caccacccagctgggacaaatcagatgacccttgtggagcaccttgggaaggagtaatctgcaataaatcaagggttacttcattgtaatatatataaat |
30040917 |
T |
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| Q |
146 |
tgaacattattattccttgttaactttggtatattaattttatcacccttttaatcacacttttccaacctactaatttaaaaaattctactttgtcatt |
245 |
Q |
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| T |
30040918 |
tgaacattattattccttgttaactttggtatattaattttatcacccttttactcacacttttccaacctactaatttaaaaaattctactttgtcatt |
30041017 |
T |
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| Q |
246 |
tacataaaaaatataggagattgtcaaccatgggcctgaagggtgaattaagtggagatatt |
307 |
Q |
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| T |
30041018 |
tacataaaaaatataggagattgtcaaccatgggcctgaagggtgaattaagtggagatatt |
30041079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 30030353 - 30030611
Alignment:
| Q |
46 |
caccacccagctgggacaaatcagatgacccttgtggagcaccttgggaaggagtaacctgcaataaatcaagggttacttcattgtaatatata-taaa |
144 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| | || |
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| T |
30030353 |
caccacctagctgggataaatcagatgacccttgtggagcaccatgggaaggagtgacctgcaacaaatctagggttacttcattgtaataaatattcaa |
30030452 |
T |
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| Q |
145 |
ttgaacattattattccttgttaactttggtatattaattttatcacccttttaatcacacttttccaacctactaatttaaaaaattctactttgtcat |
244 |
Q |
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|| ||||||||| ||||| | ||||||||||||||||||| |||| | ||||| | ||||||||||| |||||||||||| ||| || |||||||| |
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| T |
30030453 |
ttcaacattattgatccttttgaactttggtatattaatttcatcatctttttatt--cacttttccaa-ctactaatttaagaaa-aatattttgtcat |
30030548 |
T |
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| Q |
245 |
ttacataaaaaatataggagattgtcaaccatgggcctgaagggtgaattaagtggagatatt |
307 |
Q |
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| T |
30030549 |
gtgcatgaaaaatataggggactatcaaccatgggcctgaagggtaaattaagtggagatatt |
30030611 |
T |
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