View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_high_17 (Length: 293)
Name: NF18763_high_17
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_17 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 114 - 293
Target Start/End: Complemental strand, 43069647 - 43069472
Alignment:
| Q |
114 |
tgatggcataaactagcttacgaacgagttttatatatgccggaggtgcatgcaggattcaaccagtgtgctacttccttttccttctacctaacaaac- |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43069647 |
tgatggcataaactagcttacgaacgagttttat----gccggaggtgca----ggattcaaccagtgtgctacttccttttccttctacctaacaaaca |
43069556 |
T |
|
| Q |
213 |
---tactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagtgaggagac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43069555 |
aactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagtgaggagac |
43069472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 43070211 - 43070153
Alignment:
| Q |
17 |
ccttcctcccaatatatataatttattttaacaaatgatgtacacaagagttaacatat |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43070211 |
ccttcctcccaatatatataatttattttaacaaatgatgtacacaagagttaacatat |
43070153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University