View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_18 (Length: 288)
Name: NF18763_high_18
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 35822008 - 35821749
Alignment:
| Q |
11 |
tttaacttcaaatgcttttgaacctaaaaaagaatctacaacaacaaatgaacacaatttttcatgtataacattcacaaaaatatacacctttgtatcc |
110 |
Q |
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| T |
35822008 |
tttaacttcaaatgcttttgaacctaaaaaagaatctacaacaacaaatgaacacaatttttcatgtataacattcacaaaaatatacacctttgtatcc |
35821909 |
T |
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| Q |
111 |
accatgtcatctcattactcattacacacacatcctaccataatcccctcacaaagaatgatgaggttgagaacaacacctattaagcaacctaagcaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821908 |
accatgtcatctcattactcattacacacacatcctaccataatcccctcacaaagaatgatgaggttgagaacaacacctattaagcaacctaagcaat |
35821809 |
T |
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| Q |
211 |
gcatcagcttttctcctagctctcaaagaaccatcagcagccaaactttgaagagaagga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821808 |
gcatcagcttttctcctagctctcaaagaaccatcagcagccaaactttgaagagaagga |
35821749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 32038918 - 32038856
Alignment:
| Q |
205 |
agcaatgcatcagcttttctcctagctctcaaagaaccatcagcagccaaactttgaagagaa |
267 |
Q |
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| T |
32038918 |
agcaatgaatcagcctttctttgagctctcaaaaaaccatcagaagccaaactttgaagagaa |
32038856 |
T |
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