View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_3 (Length: 505)
Name: NF18763_high_3
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 3438762 - 3438462
Alignment:
| Q |
8 |
acagcatagtaaaacaaacctgaggatatgaagctcgtagcttacgagcttctaaagcacatctttgagcagatatctgtccaaaatgcaaatagggaga |
107 |
Q |
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| T |
3438762 |
acagcatagtaaaacaaacctgaggatatgaagctcgtagcttacgagcttctaaagcacatctttgagcagatatctgtccaaaatgcaaatagggaga |
3438663 |
T |
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| Q |
108 |
taaaccagaaagtgcagttggtttacaagggttgttgcgatctgtagaataatttctcaaccttttagtcaagaatccatttttacttcccatcaatact |
207 |
Q |
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| T |
3438662 |
taaaccagaaagtgcagttggtttacaagggttgttgcgatctgtagaataatttctcaaccttttagtcaagaatccatttttacttcccatcaatact |
3438563 |
T |
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| Q |
208 |
tccattgcagcaatttctccaggctcgcaccaatccacttcaggaacctcagatccactcctagtttaggatagaaagaggatacgataataatgacaac |
307 |
Q |
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| T |
3438562 |
tccattgcagcaatttctccaggctcgcaccaatccacttcaggaacctcagatccactcctagtttaggatagaaagaggatacaataataatgacaac |
3438463 |
T |
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| Q |
308 |
t |
308 |
Q |
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| T |
3438462 |
t |
3438462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 373 - 490
Target Start/End: Complemental strand, 3438397 - 3438280
Alignment:
| Q |
373 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaagcacatataactaaa |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3438397 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaa |
3438298 |
T |
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| Q |
473 |
gtctcaaaccttaaaact |
490 |
Q |
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| T |
3438297 |
gtctcaaaccttaaaact |
3438280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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