View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_30 (Length: 237)
Name: NF18763_high_30
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_30 |
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| [»] scaffold0002 (5 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 403228 - 403014
Alignment:
| Q |
1 |
atacgaaataggtttataaatcatattttatttggatatgatttgtaggaaatgaacccctcaactcaattgagttgagaa--atatgacggttaatttt |
98 |
Q |
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| T |
403228 |
atacgaaataggtttataaatcatattttatttgaatatgatttgttggaaatgaacccctcaactcaattgagttgagaaatatatgacggttaatttt |
403129 |
T |
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| Q |
99 |
ttcaattctcctaacagccatagtttgaacatgaggttgatgtatcataataaaaatttgtttaaatc---tgatgagtactcataaacatgtgaaggtg |
195 |
Q |
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| T |
403128 |
ttcaattctcctaacagccatagtgtgaacatgtggttgatgtatcttaataaaaatttgattaaatcttatgatgagtactcataaacatgtgaaggtg |
403029 |
T |
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| Q |
196 |
aagcttcaagctcat |
210 |
Q |
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||||||||||||||| |
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| T |
403028 |
aagcttcaagctcat |
403014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 402840 - 402686
Alignment:
| Q |
36 |
atatgatttgtaggaaatgaacccctcaactcaattgagttgagaaatatgacggttaattttttcaattctcctaacagccatagtttgaacatgaggt |
135 |
Q |
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| T |
402840 |
atatgatttgtaggaaatgagacc-----ctcaattgagttgagaaatatgagggttcaatttttcaaatctcctagcaaccatagtgtgaacatgaggt |
402746 |
T |
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| Q |
136 |
tgatgtatcataataaaaatttgtttaaa---tctgatgagtactcataaacatgtgaag |
192 |
Q |
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| T |
402745 |
tgatgtatcataataataatttgattaaattttatgatgagtattcataaacgtgtgaag |
402686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 406015 - 405933
Alignment:
| Q |
1 |
atacgaaataggtttataaatcatattttatttggatatgatttgtaggaaatgaacccctcaactcaattgagttgagaaatatgac |
88 |
Q |
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| T |
406015 |
atacgaaataggtttacaagtcatattttatttgaatatgatttgtaggaaatgagccc-----ctcaattgagttgagaaatatgac |
405933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 405687 - 405566
Alignment:
| Q |
7 |
aataggtttataaatcatattttatttgga-tatgatttgtaggaaatgaacccctcaactcaattgagttgagaaatatgacggttaattttttcaatt |
105 |
Q |
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|||||||| ||||||||| || ||||| || || |||||||||||||||| |||||||| |||||||||||||||||||| | | |||||||| | |
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| T |
405687 |
aataggttcataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaa-----ttgagttgagaaatatgacgaatcaatttttcaact |
405593 |
T |
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| Q |
106 |
ctcctaacagccatagtttgaacatga |
132 |
Q |
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| T |
405592 |
ctcctaacaaccatagtgtgaacatga |
405566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 402273 - 402146
Alignment:
| Q |
1 |
atacgaaataggtttataaatcatattttatttgga-tatgatttgtaggaaatgaacccctcaactcaattgagttgagaaatatgacggttaattttt |
99 |
Q |
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|||||||||||||| |||| ||| || ||||| || || |||||||||||||||| ||| |||||||||||||||||||||||| | | |||| |
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| T |
402273 |
atacgaaataggttcttaaaacatgttatattttgaataagatttgtaggaaatgagccc-----ttcaattgagttgagaaatatgacgaatcaatttt |
402179 |
T |
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| Q |
100 |
tcaattctcctaacagccatagtttgaacatga |
132 |
Q |
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|||| |||||||||| ||||||| ||||||||| |
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| T |
402178 |
tcaaatctcctaacaaccatagtctgaacatga |
402146 |
T |
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