View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_4 (Length: 467)
Name: NF18763_high_4
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 203 - 456
Target Start/End: Original strand, 38268453 - 38268706
Alignment:
| Q |
203 |
cacaaaatgctcagctgcacgctactattactgtggctgctgttgcttctgctatagctgccattgcagcagcaacagcaaattcatcaacacaaaacaa |
302 |
Q |
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| T |
38268453 |
cacaaaatgctcagctgcacgctactattactgtggctgctgttgcttctgctatagctgccattgcagcagcaacagcaaattcatcaacacaaaacaa |
38268552 |
T |
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| Q |
303 |
ggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaatgggagctgagcgc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38268553 |
ggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaatgggagctgagcgc |
38268652 |
T |
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| Q |
403 |
gaccaccttgcatcggtagtcagctcagctgtgaatgttcgttctcatgatgat |
456 |
Q |
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| T |
38268653 |
gaccaccttgcatcggtggtcagctcagctgtgaatgttcgttctcatgatgat |
38268706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 38268250 - 38268414
Alignment:
| Q |
1 |
tagttctatatttttac-atgtggcttatgcttattcctgttaatgcatgtgcagttttttcggacaaacaattccattcacccattattcaatggtgga |
99 |
Q |
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| T |
38268250 |
tagttctatatttttactatgtggcttatgcttattcctgttaatgtatgtgcagttttttcggacaaacaattccattcacccattattcaatggtgga |
38268349 |
T |
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| Q |
100 |
agagcaagtgcaggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggtt |
164 |
Q |
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| T |
38268350 |
agagcaagtgccggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggtt |
38268414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 38312118 - 38312216
Alignment:
| Q |
66 |
aaacaattccattcacccattattcaatggtggaagagcaagtgcaggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggtt |
164 |
Q |
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| T |
38312118 |
aaacaattccattcacccattatctaatggtggaagagcaactgctgctgttggcagcagcacaacttgttcaggacctaaaactgtaagaagatggtt |
38312216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 38307166 - 38307292
Alignment:
| Q |
286 |
tcatcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaag |
385 |
Q |
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| T |
38307166 |
tcatcaacaccaaacaagggcgagacaatgcccaaaactgacatggctgttgcttcagctgcaacattactggaagcacaatgagtggaggctgctgaag |
38307265 |
T |
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| Q |
386 |
caatgggagctgagcgcgaccaccttg |
412 |
Q |
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| T |
38307266 |
caatgggggctgagtgcgaccaccttg |
38307292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 38271260 - 38271319
Alignment:
| Q |
48 |
tgtgcagttttttcggacaaaca-attccattcacccattattcaatggtggaagagcaa |
106 |
Q |
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| T |
38271260 |
tgtgcagttttttcggacaaactcattccattcaccaattattcattggtggaagagcaa |
38271319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 38312312 - 38312463
Alignment:
| Q |
289 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
388 |
Q |
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| T |
38312312 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccaaagcaa |
38312411 |
T |
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| Q |
389 |
tgggagctgagcgcgaccaccttgcatcggtagtcagctcagctgtgaatgt |
440 |
Q |
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|| ||||| || | || ||||||| || || || |||||||||| |||||| |
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| T |
38312412 |
tgtgagctaagtgttacaaccttgcttctgtggttagctcagctgcgaatgt |
38312463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 413
Target Start/End: Complemental strand, 31707634 - 31707429
Alignment:
| Q |
208 |
aatgctcagctgcacgctactattactgtggctgctgttgcttctgctatagctgccattgcagcagcaacagcaaattcatcaacacaaaacaaggatg |
307 |
Q |
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|||||||| || || ||| ||||| |||| ||||||||||||||||| | || || || | |||||||||||| ||| | |||| || ||||||| |
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| T |
31707634 |
aatgctcaacttcatgctgctatttctgtagctgctgttgcttctgcagttgcagctatcactgcagcaacagcagcatcaactacacctaataaggatg |
31707535 |
T |
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| Q |
308 |
agaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaatgggagctgagcgcgacca |
407 |
Q |
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|||| ||||| ||||| || ||||||| ||||| || || || || |||| || |||||||| || ||||| |||||||||||||||||| | || || |
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| T |
31707534 |
agaaaatggctaagactgatatggctgtggcttctgcagcaacacttattgctgctcaatgtgttgaagctgctgaagcaatgggagctgagagagaaca |
31707435 |
T |
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| Q |
408 |
ccttgc |
413 |
Q |
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|||||| |
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| T |
31707434 |
ccttgc |
31707429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 440
Target Start/End: Complemental strand, 15453291 - 15453162
Alignment:
| Q |
311 |
agatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaatgggagctgagcgcgaccacct |
410 |
Q |
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||||||| ||||||||| |||| || || ||||||||||| | || || || |||||||| |||||||| | || ||||| ||||||||||| ||| | |
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| T |
15453291 |
agatggcgaagacagacatggcggtagcgtcggctgccacattggtggcggctcaatgtgttgaggctgctgtggctatgggggctgagcgcgatcacat |
15453192 |
T |
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| Q |
411 |
tgcatcggtagtcagctcagctgtgaatgt |
440 |
Q |
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|| ||||| || ||||| ||||||||||| |
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| T |
15453191 |
tgattcggtggttagctctgctgtgaatgt |
15453162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 31707795 - 31707739
Alignment:
| Q |
50 |
tgcagttttttcggacaaacaattccattcacccattattcaatggtggaagagcaa |
106 |
Q |
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||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||| |
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| T |
31707795 |
tgcagttttttcgtgcaaacaattccatacaccctttattcaatggtacaagagcaa |
31707739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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