View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_high_5 (Length: 457)
Name: NF18763_high_5
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 39293046 - 39293198
Alignment:
| Q |
1 |
taagattcttttttattaattcaccgataattaatgttatgaattgtcattttataattaaaatttgggtcatattaaca--tgtttaatgaccaaataa |
98 |
Q |
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| T |
39293046 |
taagattcttttttattaattcaccgataattaatgttatgaattgtcattttataattaaaatttggatcatattaacatgtgtttaatgaccaaataa |
39293145 |
T |
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| Q |
99 |
ttcaattattttaggtcagtatcttagtccgttagtgatcgaaacatatcatg |
151 |
Q |
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| T |
39293146 |
ctcaattattttaggtcagtatcttagtccgttagtgatcgaatcatatcatg |
39293198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 337 - 440
Target Start/End: Original strand, 39293387 - 39293490
Alignment:
| Q |
337 |
ttgataagtctagagtgaattaaatattttcacaagaaaggtgtttgaattgtgaactattcaaaattactatacaatttcaagcaaatatttaaatttg |
436 |
Q |
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| T |
39293387 |
ttgataagtctagagtgaattaaatattttcacaagaaaggtgtttgaattgtgaactattcaaaattactaaacaatttcaagcaaatatttaaatttg |
39293486 |
T |
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| Q |
437 |
gtca |
440 |
Q |
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|||| |
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| T |
39293487 |
gtca |
39293490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 39293287 - 39293344
Alignment:
| Q |
238 |
cctttaaaggaaaatgtgatagcatagtaacacatgaattatgttaccctctacaagc |
295 |
Q |
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| T |
39293287 |
cctttaaaggaaaatgtgatagcatagtaacacatgaattatgttaccctctacaagc |
39293344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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