View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_high_9 (Length: 402)

Name: NF18763_high_9
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_high_9
NF18763_high_9
[»] chr5 (13 HSPs)
chr5 (8-379)||(37226117-37226487)
chr5 (85-226)||(37234706-37234847)
chr5 (326-381)||(38503507-38503562)
chr5 (328-381)||(27878593-27878646)
chr5 (330-381)||(11447316-11447367)
chr5 (327-381)||(17888369-17888423)
chr5 (327-381)||(29801652-29801706)
chr5 (331-381)||(1157069-1157119)
chr5 (324-381)||(2683680-2683737)
chr5 (330-379)||(7529670-7529719)
chr5 (328-381)||(28905625-28905678)
chr5 (328-381)||(28942020-28942073)
chr5 (329-381)||(9780160-9780212)
[»] chr3 (15 HSPs)
chr3 (326-381)||(27516315-27516370)
chr3 (323-375)||(52796834-52796886)
chr3 (330-381)||(4987004-4987055)
chr3 (330-381)||(29109235-29109286)
chr3 (327-381)||(52099832-52099886)
chr3 (327-368)||(28686604-28686645)
chr3 (328-381)||(36040322-36040375)
chr3 (327-370)||(43659036-43659079)
chr3 (327-381)||(39197951-39198005)
chr3 (327-381)||(44385346-44385400)
chr3 (327-381)||(50001951-50002005)
chr3 (332-381)||(14092989-14093038)
chr3 (332-381)||(33647285-33647334)
chr3 (324-381)||(44247718-44247775)
chr3 (330-382)||(41766718-41766770)
[»] chr8 (10 HSPs)
chr8 (324-381)||(2116600-2116657)
chr8 (323-381)||(44061178-44061236)
chr8 (327-381)||(43325447-43325501)
chr8 (332-381)||(3547236-3547285)
chr8 (330-381)||(26748042-26748093)
chr8 (334-381)||(33968843-33968890)
chr8 (327-381)||(12845665-12845719)
chr8 (323-381)||(33449444-33449502)
chr8 (324-381)||(9636296-9636353)
chr8 (330-370)||(33099698-33099738)
[»] scaffold0380 (1 HSPs)
scaffold0380 (322-381)||(37-96)
[»] scaffold0072 (1 HSPs)
scaffold0072 (327-381)||(46509-46563)
[»] chr4 (13 HSPs)
chr4 (327-381)||(34411319-34411373)
chr4 (323-381)||(11671904-11671962)
chr4 (327-381)||(25052340-25052393)
chr4 (327-381)||(53062066-53062120)
chr4 (332-368)||(31153135-31153171)
chr4 (321-381)||(44022741-44022801)
chr4 (330-381)||(22422736-22422787)
chr4 (328-370)||(41326542-41326584)
chr4 (332-381)||(34413061-34413110)
chr4 (328-381)||(39843632-39843685)
chr4 (336-381)||(56051164-56051209)
chr4 (329-381)||(50381858-50381910)
chr4 (325-381)||(56052728-56052784)
[»] chr1 (17 HSPs)
chr1 (327-381)||(43360267-43360321)
chr1 (327-377)||(50372770-50372820)
chr1 (328-381)||(10617325-10617378)
chr1 (330-381)||(2167795-2167846)
chr1 (330-381)||(23202000-23202051)
chr1 (330-381)||(29733292-29733343)
chr1 (328-381)||(26940425-26940478)
chr1 (325-381)||(32154077-32154133)
chr1 (322-370)||(45707951-45707999)
chr1 (330-381)||(30724587-30724638)
chr1 (330-381)||(32454626-32454677)
chr1 (330-381)||(46085521-46085572)
chr1 (328-381)||(11240725-11240778)
chr1 (328-381)||(16660072-16660125)
chr1 (328-377)||(29232634-29232683)
chr1 (328-381)||(34918452-34918505)
chr1 (334-370)||(13703279-13703315)
[»] chr7 (13 HSPs)
chr7 (328-381)||(41203982-41204035)
chr7 (336-381)||(3563114-3563159)
chr7 (332-381)||(11315525-11315574)
chr7 (328-381)||(20383925-20383978)
chr7 (323-368)||(38369877-38369922)
chr7 (330-375)||(45657784-45657829)
chr7 (330-381)||(10048275-10048326)
chr7 (330-381)||(41816531-41816582)
chr7 (330-381)||(48402504-48402555)
chr7 (327-381)||(33614078-33614132)
chr7 (327-381)||(46290418-46290472)
chr7 (328-381)||(37031201-37031254)
chr7 (336-381)||(37545394-37545439)
[»] chr6 (4 HSPs)
chr6 (328-381)||(3711424-3711477)
chr6 (327-375)||(251794-251842)
chr6 (333-380)||(7341308-7341355)
chr6 (312-375)||(33504526-33504589)
[»] chr2 (9 HSPs)
chr2 (324-381)||(38376523-38376580)
chr2 (325-381)||(41322055-41322111)
chr2 (327-381)||(42578571-42578625)
chr2 (330-381)||(3207207-3207258)
chr2 (330-381)||(27337184-27337235)
chr2 (331-381)||(37472180-37472230)
chr2 (327-381)||(39676225-39676279)
chr2 (332-381)||(10913453-10913502)
chr2 (325-381)||(5077087-5077142)
[»] scaffold0385 (1 HSPs)
scaffold0385 (328-381)||(11898-11950)
[»] scaffold0069 (1 HSPs)
scaffold0069 (333-381)||(35962-36010)
[»] scaffold0060 (1 HSPs)
scaffold0060 (329-381)||(67903-67955)
[»] scaffold0459 (1 HSPs)
scaffold0459 (333-380)||(12341-12388)
[»] scaffold0366 (2 HSPs)
scaffold0366 (333-380)||(9982-10029)
scaffold0366 (333-380)||(13648-13695)
[»] scaffold0031 (1 HSPs)
scaffold0031 (327-381)||(1481-1535)
[»] scaffold0096 (1 HSPs)
scaffold0096 (333-381)||(28076-28124)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 37226487 - 37226117
Alignment:
Q  8 cgaagaatatacattaactactttgaattaatataaaaatggaaatatgaatttgagaaagtcgtataaattcccacttcaattttaaattctgagccac 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37226487 cgaataatatacattaactactttgaattaatataaaaatggaaatatgaatttgagaaagtcgtataaattcccacttcaattttaaattctgagccac 37226388  T
Q  108 gcctaagcagctgtgattctttgacttcaatatcatataaaccaaaatggaatctacatgacaataccagttgcataaagcatcatttgatacaagtgat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| | |||||||||| |||||||||    
T  37226387 gcctaagcagctgtgattctttgacttcaatatcatataaaccaaaatggaatctacttgactataccagttacatataacatcatttgagacaagtgat 37226288  T
Q  208 aattttctttgtagatattcctgccctattgtttattgaaaatgaattaaaatttactttaattaagctcnnnnnnnttaccaaaaattgtcttatctat 307  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  37226287 aactttgtttgtagatattcctgccctattgtttattgaaaatgaattaaaatttactttaattaagctc-aaaaaattaccaaaaattgtcttatctat 37226189  T
Q  308 aaacaatttaggcacatcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaaga 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37226188 aaacaatttaggcacatcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaaga 37226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 37234847 - 37234706
Alignment:
Q  85 ttcaattttaaattctgagccacgcctaagcagctgtgattctttgacttcaatatcatataaaccaaaatggaatctacatgacaataccagttgcata 184  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37234847 ttcaattttaaattatgaaccacgcctaagcagctgtgattcgttgacttcaatatcatataaaccaaaatggaatctacatgacaataccagttgcata 37234748  T
Q  185 aagcatcatttgatacaagtgataattttctttgtagatatt 226  Q
    |||||| |||||| ||||||||||| ||||||||||||||||    
T  37234747 aagcataatttgagacaagtgataactttctttgtagatatt 37234706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 38503507 - 38503562
Alignment:
Q  326 atttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  38503507 atttagggtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagaga 38503562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 27878593 - 27878646
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  27878593 ttagggtgtgtttggtttggaagagaaattgtgaagagagaaagaggtgagaga 27878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 11447367 - 11447316
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  11447367 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 11447316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 17888423 - 17888369
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| |||| |||||    
T  17888423 tttagggtgtgtttggtttagaagagaaattgtgaagagagaaataggtgagaga 17888369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 29801652 - 29801706
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| || ||| ||||||||||  ||||||||||    
T  29801652 tttagggtgtgtttggtttggaagaaaagttgagaagagagaagtaggtaagaga 29801706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 1157119 - 1157069
Alignment:
Q  331 gggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||| |||||||| ||| ||||||||||| |||| |||||    
T  1157119 gggtgtgtttggtttagaagagaagttgtgaagagagaaataggtgagaga 1157069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 2683680 - 2683737
Alignment:
Q  324 tcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| ||||||||||||||||| |||||||| ||  ||||||| ||| ||||||||||    
T  2683680 tcatatagggtgtgtttggtttagaagagaagttatgaagagataaataggtaagaga 2683737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 7529670 - 7529719
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaaga 379  Q
    ||||||||||||||| ||||||||| |||  |||||||||| ||||||||    
T  7529670 agggtgtgtttggttcggaagagaagttggaaagagagaaataggtaaga 7529719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 28905678 - 28905625
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||  ||||||| ||  ||||||||||| ||||||||||    
T  28905678 ttagggtgtgtttggtttataagagaagttaagaagagagaaataggtaagaga 28905625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 28942073 - 28942020
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||  ||||||| ||  ||||||||||| ||||||||||    
T  28942073 ttagggtgtgtttggtttataagagaagttaagaagagagaaataggtaagaga 28942020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 9780160 - 9780212
Alignment:
Q  329 tagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||  ||||||| ||| ||||| ||||| ||||||||||    
T  9780160 tagggtgtgtttggtttataagagaagttgtgaagatagaaataggtaagaga 9780212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 27516370 - 27516315
Alignment:
Q  326 atttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  27516370 atttagggtgtgtttggtttggaagagaagttgagaagagagaaataggtaagaga 27516315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 52796886 - 52796834
Alignment:
Q  323 atcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggt 375  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  52796886 atcatttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggt 52796834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 4987055 - 4987004
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  4987055 agggtgtgtttggtttggaagagaagttgagaagagagaagtaggtaagaga 4987004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 29109235 - 29109286
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  29109235 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 29109286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 52099886 - 52099832
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| |||||||| ||| ||||||| ||| ||||||||||    
T  52099886 tttagggtgtgtttggtttagaagagaagttgtgaagagaaaaataggtaagaga 52099832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 28686645 - 28686604
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagaga 368  Q
    |||||||||||||||||||||||||||| ||| |||||||||    
T  28686645 tttagggtgtgtttggtttggaagagaaattgtgaagagaga 28686604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 36040322 - 36040375
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| |||| |||||    
T  36040322 ttagggtgtgtttggttaggaagagaagttgtgaagagagaaataggtgagaga 36040375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 43659036 - 43659079
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaa 370  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||    
T  43659036 tttagggtgtgtttggtttagaagagaagttgtgaagagagaaa 43659079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 39198005 - 39197951
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| |||||||| |||  |||||||||| |||| |||||    
T  39198005 tttagggtgtgtttggtttagaagagaagttgtaaagagagaaagaggtgagaga 39197951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 44385400 - 44385346
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| |||||||||||||||||||  || ||||||||| |||||| |||||    
T  44385400 tttagggtttgtttggtttggaagagaagctgtgaagagagagacaggtgagaga 44385346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 50002005 - 50001951
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| ||||||||||||||||||| |||  |||||||||| |||| |||||    
T  50002005 tttagggtatgtttggtttggaagagaagttgtaaagagagaaataggtgagaga 50001951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 14093038 - 14092989
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| |||| ||| ||||||||||| |||| |||||    
T  14093038 ggtgtgtttggtttggaaaagaagttgtgaagagagaaagaggtgagaga 14092989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 33647334 - 33647285
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||| ||||||||| ||| ||||||||||| |||| |||||    
T  33647334 ggtgtgtttggttgggaagagaaattgtgaagagagaaagaggtgagaga 33647285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 44247775 - 44247718
Alignment:
Q  324 tcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||| | |||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  44247775 tcatttaggatatgtttggttgagaagagaagttgtgaagagagaaataggtaagaga 44247718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 41766770 - 41766718
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagagat 382  Q
    |||||||||||||||  |||||||| ||| ||||||||||  |||||||||||    
T  41766770 agggtgtgtttggttgtgaagagaaattgtgaagagagaagtaggtaagagat 41766718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 2116657 - 2116600
Alignment:
Q  324 tcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  2116657 tcatttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 2116600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 44061178 - 44061236
Alignment:
Q  323 atcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  44061178 atcatttatggtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgagaga 44061236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 43325447 - 43325501
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||    
T  43325447 tttagggtgtgtttggtttagaagagaagttgtgaagagagaagtaggtaagaga 43325501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 3547236 - 3547285
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||| ||| ||||||||||| | ||||||||    
T  3547236 ggtgtgtttggtttggaagagaagttgtgaagagagaaatatgtaagaga 3547285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 26748093 - 26748042
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||| ||||||||| |||  |||||||||| ||||||||||    
T  26748093 agggtgtgtttggttcggaagagaagttgaaaagagagaaataggtaagaga 26748042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 33968843 - 33968890
Alignment:
Q  334 tgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  33968843 tgtgtttggtttggaagagaagttgagaagagagaattaggtaagaga 33968890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 12845719 - 12845665
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| |||||||||||| |||||||||| ||| ||||||||||| |||| |||||    
T  12845719 tttatggtgtgtttggtgtggaagagaagttgtgaagagagaaataggtgagaga 12845665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 33449444 - 33449502
Alignment:
Q  323 atcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| |||| ||||||||||||||||||| || ||  ||||||||||| ||||||||||    
T  33449444 atcacttagtgtgtgtttggtttggaagataagttatgaagagagaaataggtaagaga 33449502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 9636353 - 9636296
Alignment:
Q  324 tcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||| || ||||||||||| | |||||||| ||||||||||||||  ||||||||||    
T  9636353 tcattaagagtgtgtttggtatagaagagaagttgcgaagagagaagtaggtaagaga 9636296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 33099738 - 33099698
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaa 370  Q
    |||||||||||||||| |||||||| ||| |||||||||||    
T  33099738 agggtgtgtttggtttagaagagaagttgtgaagagagaaa 33099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 37 - 96
Alignment:
Q  322 catcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  37 catcacttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 46509 - 46563
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  46509 tttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 46563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 34411319 - 34411373
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  34411319 tttagggtgtgtttggtatggaagagaagttgtgaagagagaaataggtaagaga 34411373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 11671962 - 11671904
Alignment:
Q  323 atcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| |||||||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  11671962 atcatttatggtgtgtttggttaagaagagaagttgtgaagagagaaataggtaagaga 11671904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 25052393 - 25052340
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  25052393 tttagggtgtgtttggtt-ggaagagaagttgtgaagagagaaataggtaagaga 25052340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 53062066 - 53062120
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||    
T  53062066 tttagggtgtgtttggtttagaagagaagttgtgaagagagaaataagtaagaga 53062120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 31153135 - 31153171
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagaga 368  Q
    ||||||||||||||||||||||||||| |||||||||    
T  31153135 ggtgtgtttggtttggaagagaatttgagaagagaga 31153171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 44022801 - 44022741
Alignment:
Q  321 acatcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||| |||||||||||||||||  |||||||| ||| ||||||||||| | ||||||||    
T  44022801 acatcaattagggtgtgtttggttgtgaagagaaattgtgaagagagaaataagtaagaga 44022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 22422736 - 22422787
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||||||| || ||| ||||||||||| |||| |||||    
T  22422736 agggtgtgtttggtttggaagaaaagttgtgaagagagaaataggtgagaga 22422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 41326542 - 41326584
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaa 370  Q
    |||||||||||||||||| |||||||| ||| |||||||||||    
T  41326542 ttagggtgtgtttggtttagaagagaagttgtgaagagagaaa 41326584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 34413110 - 34413061
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  34413110 ggtgtgtttggttaagaagagaagttgtgaagagagaaataggtaagaga 34413061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 39843685 - 39843632
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||| ||| | ||||| ||| |||| |||||    
T  39843685 ttagggtgtgtttggtttggaagagaagttgtggagagataaataggtgagaga 39843632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 56051164 - 56051209
Alignment:
Q  336 tgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  56051164 tgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 56051209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 50381858 - 50381910
Alignment:
Q  329 tagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||  ||||||| ||| ||||||| ||| ||||||||||    
T  50381858 tagggtgtgtttggtttataagagaagttgtgaagagaaaaataggtaagaga 50381910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 56052784 - 56052728
Alignment:
Q  325 catttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| |||||||||||||||  |||||||| ||| ||||||||||| |||| |||||    
T  56052784 cattaagggtgtgtttggttatgaagagaaattgtgaagagagaaataggtgagaga 56052728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 43360267 - 43360321
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  43360267 tttagggtatgtttggtttggaagagaagttgtgaagagagaaataggtaagaga 43360321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 50372770 - 50372820
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaa 377  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||||    
T  50372770 tttagggtgtgtttggtttagaagagaatttgtgaagagagaaataggtaa 50372820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 10617378 - 10617325
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  10617378 ttagggtgtgtttggtatggaagagaagttgtgaagagagaaataggtaagaga 10617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 2167846 - 2167795
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  2167846 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 2167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 23202051 - 23202000
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  23202051 agggtatgtttggtttggaagagaagttgtgaagagagaaataggtaagaga 23202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 29733343 - 29733292
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  29733343 agggtgtgtttggtatggaagagaagttgtgaagagagaaataggtaagaga 29733292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 26940478 - 26940425
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||| ||||||||||||||||||| ||| ||||| ||||| ||||||||||    
T  26940478 ttagggtatgtttggtttggaagagaagttgtgaagatagaaataggtaagaga 26940425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 32154077 - 32154133
Alignment:
Q  325 catttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| ||| ||||||| ||| ||||||||||| |||| |||||    
T  32154077 catttagggtgtgtttggattgtaagagaaattgtgaagagagaaataggtgagaga 32154133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 45707951 - 45707999
Alignment:
Q  322 catcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaa 370  Q
    |||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  45707951 catcattatgggtgtgtttggtttggaagagaagttgtgaagagagaaa 45707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 30724587 - 30724638
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| |||  |||||||||| |||| |||||    
T  30724587 agggtgtgtttggtttggaagagaagttgtaaagagagaaataggtgagaga 30724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 32454677 - 32454626
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| || |||||||    
T  32454677 agggtgtgtttggtttggaagagaaattgtgaagaaagaaatagataagaga 32454626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 46085521 - 46085572
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||| |||||||| ||  ||||||||||| ||||||||||    
T  46085521 agggtgtgtttggtttagaagagaagttatgaagagagaaataggtaagaga 46085572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 11240778 - 11240725
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| || ||||| ||| ||||||||||| |||| |||||    
T  11240778 ttagggtgtgtttggtttagaggagaagttgtgaagagagaaataggtgagaga 11240725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 16660125 - 16660072
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||  ||||||| ||  ||||||||||| ||||||||||    
T  16660125 ttagggtgtgtttggtttataagagaagttaagaagagagaaataggtaagaga 16660072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 29232683 - 29232634
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaa 377  Q
    |||||||||||||||||| | |||||| ||| ||||||||||||| ||||    
T  29232683 ttagggtgtgtttggtttaggagagaagttgtgaagagagaaacatgtaa 29232634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 34918505 - 34918452
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| | |||||| ||| ||| ||||||| ||||||||||    
T  34918505 ttagggtgtgtttggtttaggagagaagttgtgaatagagaaataggtaagaga 34918452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 13703315 - 13703279
Alignment:
Q  334 tgtgtttggtttggaagagaatttgcgaagagagaaa 370  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  13703315 tgtgtttggtttggaagagaagttgtgaagagagaaa 13703279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 41204035 - 41203982
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||    
T  41204035 ttagggtgtgtgtggtttggaagagaagttgtgaagagagaaataggtaagaga 41203982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 3563159 - 3563114
Alignment:
Q  336 tgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  3563159 tgtttggtttggaagagaagttgtgaagagagaaataggtaagaga 3563114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 11315574 - 11315525
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  11315574 ggtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 11315525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 20383978 - 20383925
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||    
T  20383978 ttagggtgtgtttggtttagaagagaagttgtgaagagagaaatatgtaagaga 20383925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 38369922 - 38369877
Alignment:
Q  323 atcatttagggtgtgtttggtttggaagagaatttgcgaagagaga 368  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||    
T  38369922 atcatttagggtgtgtttggtttgggagagaagttgtgaagagaga 38369877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 45657829 - 45657784
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggt 375  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  45657829 agggtgtgtttggtttggaagagaagttgtgaagagagaaataggt 45657784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Complemental strand, 10048326 - 10048275
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||  ||||||| ||| ||||||||||| ||||||||||    
T  10048326 agggtgtgtttggtttaaaagagaagttgtgaagagagaaataggtaagaga 10048275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 41816531 - 41816582
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||  ||||||| ||| ||||||||||| ||||||||||    
T  41816531 agggtgtgtttggtttaaaagagaagttgtgaagagagaaataggtaagaga 41816582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 48402504 - 48402555
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||| ||||||||| ||| ||||||||||| |||| |||||    
T  48402504 agggtgtgtttggttaggaagagaagttgtgaagagagaaataggtgagaga 48402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 33614078 - 33614132
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||||  ||||||| ||| ||||||||||| | ||||||||    
T  33614078 tttagggtgtgtttggtttaaaagagaagttgtgaagagagaaatatgtaagaga 33614132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 46290418 - 46290472
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| |||||||| | |||||||| ||| ||||||||||| ||||||||||    
T  46290418 tttagggtctgtttggtgtagaagagaagttgtgaagagagaaataggtaagaga 46290472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 37031201 - 37031254
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||| | |||||||| |||  |||||||||| ||||||||||    
T  37031201 ttagggtgtgtttggtgtagaagagaagttgtaaagagagaaataggtaagaga 37031254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 37545394 - 37545439
Alignment:
Q  336 tgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  37545394 tgtttggtttggaagagaaattgtgaagagagaaataggtgagaga 37545439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 3711424 - 3711477
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  3711424 ttagggtgtgtttggtttggaagagaagttgtgaagagagaaagaggtgagaga 3711477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 251794 - 251842
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggt 375  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  251794 tttagggtgtgtttggtttggaagagaagttgtgaagagagaaataggt 251842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 7341355 - 7341308
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagag 380  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  7341355 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgagag 7341308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 33504589 - 33504526
Alignment:
Q  312 aatttaggcacatcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggt 375  Q
    ||||||| ||||| |||||||||||||||||||||  |||||| ||| ||| ||||||| ||||    
T  33504589 aatttagacacattatttagggtgtgtttggtttgagagagaagttgtgaaaagagaaataggt 33504526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 38376580 - 38376523
Alignment:
Q  324 tcatttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||    
T  38376580 tcatttagggtgtgtttggtgtagaagagaagttgtgaagagagaaataggtaagaga 38376523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 41322111 - 41322055
Alignment:
Q  325 catttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| |||||||||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  41322111 cattaagggtgtgtttggtttagaagagaagttgtgaagagagaaataggtaagaga 41322055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 42578625 - 42578571
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||| |||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  42578625 tttagggtatgtttggtttagaagagaagttgtgaagagagaaataggtaagaga 42578571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 3207207 - 3207258
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  3207207 agggtatgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 3207258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 27337184 - 27337235
Alignment:
Q  330 agggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||| ||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  27337184 agggtatgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 27337235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 37472180 - 37472230
Alignment:
Q  331 gggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||| || ||| ||||||||||| |||| |||||    
T  37472180 gggtgtgtttggtttggaagacaagttgtgaagagagaaataggtgagaga 37472230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 39676225 - 39676279
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||  |||||||| |||  |||||||||| ||||||||||    
T  39676225 tttagggtgtgtttggttcagaagagaagttggaaagagagaaataggtaagaga 39676279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 10913453 - 10913502
Alignment:
Q  332 ggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||| |||||||||| ||| ||||||||||| |||| |||||    
T  10913453 ggtgtgtttggtgtggaagagaagttgtgaagagagaaataggtgagaga 10913502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 5077087 - 5077142
Alignment:
Q  325 catttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||||||||| |||||| |||  |||||||||| ||| ||||||    
T  5077087 catttagggtgtgtttggtttgg-agagaagttggaaagagagaaataggcaagaga 5077142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 11950 - 11898
Alignment:
Q  328 ttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  11950 ttagggtgtgtttggtt-ggaagagaagttgtgaagagagaaataggtaagaga 11898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 35962 - 36010
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  35962 gtgtgtttggtttggaagagaagttgtgaagagagaaataggtgagaga 36010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 67955 - 67903
Alignment:
Q  329 tagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||||||| ||||||||| |||  |||||||||| ||||||||||    
T  67955 tagggtgtgtttggttcggaagagaagttggaaagagagaaataggtaagaga 67903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 12341 - 12388
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagag 380  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  12341 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgagag 12388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 9982 - 10029
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagag 380  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  9982 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgagag 10029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 13648 - 13695
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagag 380  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| ||||    
T  13648 gtgtgtttggtttggaagagaaattgtgaagagagaaataggtgagag 13695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Original strand, 1481 - 1535
Alignment:
Q  327 tttagggtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||| |||||||||||||| |||||||| ||| ||||||| ||| ||||||||||    
T  1481 tttaaggtgtgtttggtttagaagagaagttgtgaagagataaataggtaagaga 1535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 28124 - 28076
Alignment:
Q  333 gtgtgtttggtttggaagagaatttgcgaagagagaaacaggtaagaga 381  Q
    |||||||||||| ||||||||| |||  |||||||||| ||||||||||    
T  28124 gtgtgtttggttcggaagagaagttgaaaagagagaaataggtaagaga 28076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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