View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_1 (Length: 769)
Name: NF18763_low_1
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 769
Target Start/End: Complemental strand, 243297 - 242524
Alignment:
| Q |
8 |
ccaagaaaatactacgctaatctcttaattaatgtgaaaaacagcttaatcaatcatgccagacaacgttaagtacataggttttcaaacacttgcgaga |
107 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243297 |
ccaacaaaatactacgctaatctcttaattaacgtgaaaaacagcttaatcaatcatgccagacaacgttaagtacataggttttcaaacacttgcgaga |
243198 |
T |
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| Q |
108 |
aatcggtttcatcctgataaaaaatggagcaatcccgaacaaataacaacatcatcatctcaaaaaagaggcttgatagagtagagtaggccgatatgca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243197 |
aatcggtttcatcctgataaaaaatggagcaatcccgaacaaataacaacatcatcatctcaaaaaagaggcttgatagagtagagtaggccgatatgca |
243098 |
T |
|
| Q |
208 |
aatttaaaactccacaaattctgcaaagaaaccaaaattgaaataactctatccactaccatgaactagtaacaatcattcatggcaaaaacaaatacct |
307 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243097 |
aatttaaaactccacaaattctgtaaagaaaccaaaattgaaataaccctatccactaccatgaactagtaacaatcattcatggcaaaaacaaatacct |
242998 |
T |
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| Q |
308 |
ccaataaagcatcatatgaccctccctgcttcacaaaacttaggacaagttgtagaaacccaccctggaaccttaatcctctagtagcaatcagatcctc |
407 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242997 |
ccaataaagcatcaaatgaccctccctgcttcacaaaacttaggacaagttgcagaaacccaccctggaaccttaatcctctagtagcaatcagatcctc |
242898 |
T |
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| Q |
408 |
ggaa-ttcactaataaaa-----------ttgcactatgcttaaaaagagagcaaagtatgaaaaggctgaccagtagtacaaactacacacacatttaa |
495 |
Q |
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| T |
242897 |
ggaatttcactaataaaatttattctaggttgcactatgcttaaaaagggagcaaagtatgaaaaggctgaccagtagtacgaactacacacacatttaa |
242798 |
T |
|
| Q |
496 |
gtcaactgttaagtctatacacacacatctgagcaatgctcttgaatcgacaaatatatacatctgc--atttgtattaagttaactgcttcctcagtcg |
593 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
242797 |
gtcaactgttaagtctat--acacacatctgagcaatgctcttgaatcgacaaatatatacatctgcatatttgtattaagttaactgcttcctcagtcg |
242700 |
T |
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| Q |
594 |
cataatttggatgatccagtgccaattcaagtctgttattatacagatttaatgcttttgagtggtaataaaaagatatgtagtaatgttgtcaatcgca |
693 |
Q |
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| T |
242699 |
cataatttggatgatccagtgccaattcaagtctgttattatacagatttaatgcttttgagtggtaataaaaagatatgtagtaatgttgtcaatcgca |
242600 |
T |
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| Q |
694 |
aattgcagaaaacaacagcttgatgaaattctgctatatagcaaaactatttaacgaccctgggtattagtatgtt |
769 |
Q |
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| T |
242599 |
aattgcagaaaacaacagcttgatgaaattctgctatatagcaaaactatttaacgacgctgtgtattagtatgtt |
242524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 7e-45; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 6908745 - 6908629
Alignment:
| Q |
266 |
ccatgaactagtaacaatcattcatggcaaaaacaaatacctccaataaagcatcatatgaccctccctgcttcacaaaacttaggacaagttgtagaaa |
365 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||||||||| |
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| T |
6908745 |
ccatgaactagtaacaatcattcatggcaaaaacaagtacctccaataaagcatctgatgatcctccctacttcacaaaacttagaacaagttgtagaaa |
6908646 |
T |
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| Q |
366 |
cccaccctggaacctta |
382 |
Q |
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| T |
6908645 |
cccaccctggaacctta |
6908629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 529 - 769
Target Start/End: Complemental strand, 6908399 - 6908169
Alignment:
| Q |
529 |
caatgctcttgaatcgacaaatatatacatctgcatttgtatt----aagttaactgcttcctcagtcgcataatttggatgatccagtgccaattcaag |
624 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||||| ||| | | ||| |
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| T |
6908399 |
caatgctcttgaatcgacaaatatatacatctgtgtttgtattgagtaagttaactgctttctcagtcacataatttggatgacccaatttga---caaa |
6908303 |
T |
|
| Q |
625 |
tctgttattatacagatttaatgcttttgagtggtaataaaaagatatgtagtaatgttgtcaatcgcaaattgcagaaaacaacagcttgatgaaattc |
724 |
Q |
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| | |||||||||||||||||||||||| |||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
6908302 |
tat------atacagatttaatgcttttgagtgataat-----gatat-tagtagtgttgtcgatcgcaaattgcagaaaacaacagcttgatcaaattc |
6908215 |
T |
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| Q |
725 |
tgctatatagc-aaaactatttaacgaccctgggtattagtatgtt |
769 |
Q |
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| T |
6908214 |
tgctgtatagcaaaaactatttaacgacacttagtattagtatgtt |
6908169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 6908957 - 6908854
Alignment:
| Q |
31 |
cttaattaatgtgaaaaacagcttaatcaatcatgccagacaacgtt---aagtacataggttttcaaacacttgcgagaaatcggtttcatcctgataa |
127 |
Q |
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|||||| || || |||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||| || ||||||||||||| |
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| T |
6908957 |
cttaatgaaggtaaaaagcagcttaatcaatcatgccaaacaacgtttttaagtacataagttttcaaacactaacgagaaattggattcatcctgataa |
6908858 |
T |
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| Q |
128 |
aaaa |
131 |
Q |
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|||| |
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| T |
6908857 |
aaaa |
6908854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 595 - 651
Target Start/End: Complemental strand, 6928642 - 6928586
Alignment:
| Q |
595 |
ataatttggatgatccagtgccaattcaagtctgttattatacagatttaatgcttt |
651 |
Q |
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||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||| |
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| T |
6928642 |
ataatttggatgatccaataccaaatcaagtctgttattataaagatttaatgcttt |
6928586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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