View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_low_11 (Length: 441)
Name: NF18763_low_11
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 274714 - 274291
Alignment:
| Q |
18 |
aaatagtggtgcattttagactcttgaagaagtctaactatttagtattgaaagatcattacccactcttacttttcatagttataatcccctcaaaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274714 |
aaatagtggtgcattttagactcttgaagaagtctaactatttagtattgaaagatcattacccactcttacttttcatagttataatcccctcaaaaat |
274615 |
T |
|
| Q |
118 |
tggataactaagagccattacatagctaactaggaaaagttgaccaaacatatcttcaaaatctcttgtattgaatagtctccataaaccaccaaagaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274614 |
tggataactaagagccattacatagctaactaggaaaagttgaccaaacatatcttcaatatctcttgtattgaatagtctccataaaccaccaaagaag |
274515 |
T |
|
| Q |
218 |
caaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaatctaccttgttcatatttcttgattttctctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274514 |
caaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaatctaccttgttcatatttcttgattttctctt |
274415 |
T |
|
| Q |
318 |
tatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatttcttaactgcctctgtcattgcaaacaaactagtaactga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
274414 |
tatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccatttcttaactgcctctgtcattgcaaacaaactggtaactga |
274315 |
T |
|
| Q |
418 |
tttcagaatccaaattctttgttc |
441 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
274314 |
tttcagaatccaaattctttgttc |
274291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 378
Target Start/End: Original strand, 17577774 - 17578055
Alignment:
| Q |
91 |
tttcatagttataatcccctcaaaaattggataactaagagccattacatagctaactaggaaaagttgaccaaacatatcttcaaaatctcttgtattg |
190 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||||| | ||| |||| |||||||| || ||||||||||||||||| || |||||||| | ||||| |
|
|
| T |
17577774 |
tttcatacttataatcccctcaataataggataacttaaagctattagatagctaatgagaaaaagttgaccaaacatttcatcaaaatccttcttattg |
17577873 |
T |
|
| Q |
191 |
aatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattggagacatgtacaaagctgcaccttgaaaatcaaatctac |
290 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | |||| | |||||| ||||||| || ||| | ||| |||| | |||||||| ||||| |||| ||| |
|
|
| T |
17577874 |
agtagtctccataaaccaccaaagaagcaaacaatgtttattatgagcaacacaatcaatggtgccatcaacaacgttgcaccttcaaaattaaatttac |
17577973 |
T |
|
| Q |
291 |
cttgttcatatttcttgattttctctttatctgtgtcaattgctttgtttgacaagttgaatttcttcttgttcaatccaaaccattt |
378 |
Q |
| |
|
|||| ||||||| ||| | | |||||| |||||| |||||||||||| || ||||||| ||| ||||| ||||||||||| |
|
|
| T |
17577974 |
cttgctcatattgcttta------ccttatctttgtcaactgctttgtttgataaagtgaattttcccttattcaacccaaaccattt |
17578055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 16381170 - 16381345
Alignment:
| Q |
77 |
tacccactcttacttttcatagttataatcccctcaaaaattggataactaagagccattacatagctaactaggaaaagttgaccaaacatatcttcaa |
176 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| | ||| ||| | || ||||||||||||||||||| ||||||| |||||||||||| || |||| |
|
|
| T |
16381170 |
tacccaccctttgttttcatagttataatcccctctagaataggaaagcttagagccattacatagctaataaggaaaacttgaccaaacatttcatcaa |
16381269 |
T |
|
| Q |
177 |
aatctcttgtattgaatagtctccataaaccaccaaagaagcaaatagtgttcactatgagtaacacaaccattgg |
252 |
Q |
| |
|
||| || ||||| |||| ||||||||||||||||||||||| || | || | ||||||||||||||||||||| |
|
|
| T |
16381270 |
aattcctcacattgagtagtttccataaaccaccaaagaagcaagtaatatttagtatgagtaacacaaccattgg |
16381345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 18370 - 18225
Alignment:
| Q |
76 |
ttacccactcttacttttcatagttataatcccctcaaaaattggataactaagagccattacatagctaactaggaaaagttgaccaaacatatcttca |
175 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||| | ||| ||| ||| |||| | || |||| ||| |||||||||||||||||||| || ||| |
|
|
| T |
18370 |
ttacccactcttccgcttcatagatataatcccctccacaataggacgacttagagaaagtatatagataatgaggaaaagttgaccaaacatttcatca |
18271 |
T |
|
| Q |
176 |
aaatctcttgt-attgaatagtctccataaaccaccaaagaagcaaa |
221 |
Q |
| |
|
|||| |||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
18270 |
aaat-tcttcacaatgagtagtctccataaaccaccaaagaagcaaa |
18225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University