View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_low_14 (Length: 362)

Name: NF18763_low_14
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_low_14
NF18763_low_14
[»] chr1 (7 HSPs)
chr1 (11-335)||(45549783-45550107)
chr1 (15-175)||(45544093-45544253)
chr1 (15-176)||(45544996-45545154)
chr1 (47-176)||(45550199-45550325)
chr1 (11-154)||(45548859-45549008)
chr1 (229-277)||(45544297-45544344)
chr1 (297-335)||(45549548-45549586)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 45549783 - 45550107
Alignment:
Q  11 cagagaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45549783 cagagaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttgg 45549882  T
Q  111 ctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatctgtaagccaacaaatcgaagtattaatctctatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  45549883 ctcatcatcatgcacattcattctctcaagagattcctcaagtggtttaatgtcttttctttcatctgtaagccaacaaatcaaagtattaatctctatg 45549982  T
Q  211 taaataatccgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaacaatgaatgagtctatttaaaatagtactctga 310  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45549983 taaataatctgttagggtcatgggaagctaacaagagtaaatttcacattttatcttaactccaaaacaatgaatgagtctatttaaaatagtactctga 45550082  T
Q  311 tatattgatacataatgaagagtct 335  Q
     ||||||||||||||||||||||||    
T  45550083 catattgatacataatgaagagtct 45550107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 45544093 - 45544253
Alignment:
Q  15 gaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctca 114  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||| |||  ||| |||||||| ||||| |||    
T  45544093 gaagtgtggcgcaaactgatcatggcttccagcagcagaagggtattcaatgtcagtaacaaatggctggatttttgtttcagtggtaggatttggttca 45544192  T
Q  115 tcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcat 175  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||    
T  45544193 tcatcatgcacattcattctctcaagagattcctcaagcggtgtaatgtcttttgtttcat 45544253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 45544996 - 45545154
Alignment:
Q  15 gaagtgtggcacaaactgatcatggcttccaacagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctca 114  Q
    ||||||||||||||||||||||||||||  |||| ||| ||||||||||||||||| |||| ||| |||||| ||| |||||||||||||||||| |       
T  45544996 gaagtgtggcacaaactgatcatggcttttaacatcagaagggtattcagtgtcagcaacatatgactggatttttggttctgtggtaggttttgac--- 45545092  T
Q  115 tcatcatgcacattcattctctcaagagattcctcaagtggtttaatctcttttctttcatc 176  Q
    || |||||||||||||||||||||||||||||||| |||||| | || |||||| |||||||    
T  45545093 tcgtcatgcacattcattctctcaagagattcctcgagtggtgttatgtcttttatttcatc 45545154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 45550199 - 45550325
Alignment:
Q  47 cagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattc 146  Q
    ||||||||||||||||| ||||   |||||||| |||||| ||| |||||||||||||||||| |||||   ||||||||||||||||||| ||||||||    
T  45550199 cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcat---catgcacattcattctctcgagagattc 45550295  T
Q  147 ctcaagtggtttaatctcttttctttcatc 176  Q
    ||| |||||| |||| |||||| |||||||    
T  45550296 ctcgagtggtgtaatgtcttttatttcatc 45550325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 45548859 - 45549008
Alignment:
Q  11 cagagaagtgtggcacaaactgatcat------ggcttccaacagcaggagggtattcagt---gtcagtaacagatggctggatatttcgttctgtggt 101  Q
    |||||| |||||||||||||||||||       ||||||||  || |||||||||||||||   ||||| ||||| ||||||||| ||| ||||||||||    
T  45548859 cagagaggtgtggcacaaactgatcaatatcacggcttccagaagaaggagggtattcagtactgtcagcaacaggtggctggatttttggttctgtggt 45548958  T
Q  102 aggttttggctcatcatcatgcacattcattctctcaagagattcctcaagtg 154  Q
    ||||||||||   ||||||||||||||||||||||| ||||||||||||||||    
T  45548959 aggttttggc---tcatcatgcacattcattctctctagagattcctcaagtg 45549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 45544297 - 45544344
Alignment:
Q  229 catgggaagctaacaagagtaaatttcacattttatcttaactccaaaa 277  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  45544297 catgggaagctaacaagagtaaatctcaca-tttaacttaactccaaaa 45544344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 45549548 - 45549586
Alignment:
Q  297 aaatagtactctgatatattgatacataatgaagagtct 335  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  45549548 aaatagtacactgatatattgatacataatgaggagtct 45549586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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