View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_15 (Length: 330)
Name: NF18763_low_15
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 32643138 - 32643271
Alignment:
| Q |
112 |
gaaaattcagattaaaaggctgctctccgagccaaaaatccatccaaaatgaaatgttcttgccatttctcaactcgtttaggataacattagagaaaca |
211 |
Q |
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| T |
32643138 |
gaaaattcagattaaaaggctgctctccgagccaaaaatccatccaaaatgaaatgttcttgccatttctcaactcttttcggataacattagagaaaca |
32643237 |
T |
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| Q |
212 |
atttatttccaatgaatccatcctaccacaagtg |
245 |
Q |
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| T |
32643238 |
atttatttccaatgaatccatcctaccacaagtg |
32643271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 32643292 - 32643389
Alignment:
| Q |
221 |
caatgaatccatcctaccacaagtgtttccttccggattaagaagtttttcttccactaggccatacctataatttaaagtccctttcaaatagcctt |
318 |
Q |
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| T |
32643292 |
caatgaatccatcctaccacaagtgtttccttccagattaagaagtttttcttccactaggccatacctataatttaaagttccttttaaatagcctt |
32643389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 32641824 - 32641911
Alignment:
| Q |
18 |
gttggaatattagtatcatagaccagttcttgattagcttaacacaaaacaagaaatctgatcataaataaattagaatgtatgtaca |
105 |
Q |
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| T |
32641824 |
gttggaatattagtatcatagaccagttcttgattagcttaacacaaaacaagaaatttgatcataaataaattagaatgtatgtaca |
32641911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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