View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_low_19 (Length: 299)

Name: NF18763_low_19
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_low_19
NF18763_low_19
[»] chr5 (1 HSPs)
chr5 (17-299)||(33162873-33163158)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 33163158 - 33162873
Alignment:
Q  17 ttaaccgtcattatcattcaaactacgacaaaattgcaatcaagccacccaagtaattaaccatagacaattcaaattcacgcgattgaactagttgatt 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33163158 ttaaccgtaattatcattcaaactacgacaaaattgcaatcaagccactcaagtaattaaccatagacaattcaaattcacgcgattgaactagctgatt 33163059  T
Q  117 cggttcaatttttaaacannnnnnnnnnnnn---gagagagaaatttgaaaacattgttattcaccaagaatccttgaatggcttctccaacaaagcaga 213  Q
    ||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33163058 cggttcaatttttaaacattttttttttttttttgagagagaaatttgaaaacattgttattcaccaagaatccttgaatggcttctccaacaaagcaga 33162959  T
Q  214 aagatacatttcctgaaattggggtcccttatcaagcttcttcccagtaacccacttaactttcttaaaccctacactctcaatca 299  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33162958 aaggtacatttcctgaaattggggtcccttatcaagcttcttcccagtaacccacttaactttcttaaaccctacactctcaatca 33162873  T

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