View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_low_23 (Length: 284)
Name: NF18763_low_23
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 45550795 - 45551063
Alignment:
| Q |
1 |
aatgcatggtctagcagaaaaactgagttctgaaacttattattgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattggg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45550795 |
aatgcatagtctagcagaaaaactgagttctgaaacttattattgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattggg |
45550894 |
T |
|
| Q |
101 |
aagagtatattcctcagttctacttccttgttcttgagaatcttcctccaagactgttggcttctccaaattggccttgtactgctctggcttctcttcc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45550895 |
aagagtatattcctcggttctacttccttgttcttgagaatcttcctccaagactgttggcgtctccaaattggccttgtattgctctggcttctcttcc |
45550994 |
T |
|
| Q |
201 |
acagtaaatgttttggcctggtcagtggacatgtttcgatcgatttcggtggttgatgaaacaccttca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45550995 |
acagtaaatgttttggcctggtcagtggacatgtttcgatcgatttcggtggttgatgaaacaccttca |
45551063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 45549606 - 45549714
Alignment:
| Q |
43 |
ttgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatc |
142 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
45549606 |
ttgaattgacctactcacctttcccacttgaatcagcgtctttggtttgataattgggaagagtatatgcctcagttctacttccttgatcttgagaata |
45549705 |
T |
|
| Q |
143 |
ttcctccaa |
151 |
Q |
| |
|
||||||||| |
|
|
| T |
45549706 |
ttcctccaa |
45549714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 45545619 - 45545744
Alignment:
| Q |
52 |
cctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaa |
151 |
Q |
| |
|
||||||||||| | || |||||| ||| ||||||||||| ||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45545619 |
cctactcaccttcctcatttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagctctacttccttgttcttgagaatcttcctccaa |
45545718 |
T |
|
| Q |
152 |
gactgttggcttctccaaattggcct |
177 |
Q |
| |
|
| || || || ||||||||||||||| |
|
|
| T |
45545719 |
gtctatttgcctctccaaattggcct |
45545744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 45544822 - 45544920
Alignment:
| Q |
53 |
ctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcagttctacttccttgttcttgagaatcttcctccaa |
151 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45544822 |
ctacttaccagcaccacttggatcagtgtctttggtttgataattgggatggatataagtctcagttctacttccttgatcttgagaatcttcctccaa |
45544920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 45550127 - 45550201
Alignment:
| Q |
43 |
ttgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctcag |
117 |
Q |
| |
|
|||||||| | ||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
45550127 |
ttgaattgtcttactcaccttccccacttggatcagtgtctttgatttgataattgggaagagtatatgcctcag |
45550201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University