View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_25 (Length: 270)
Name: NF18763_low_25
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 33162876 - 33162630
Alignment:
| Q |
9 |
atcataggtccataaacattctccaattgatccccaacacaaaagaaatggtccaaccaaaacaacccaccaggtctaagaaccctataaacatcaaaca |
108 |
Q |
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| T |
33162876 |
atcataggtccataaacattctccaattgatccccaacacaaaagaaatggtccaaccaaaacaacccaccaggtctaagaaccctataaacatcaaaca |
33162777 |
T |
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| Q |
109 |
acaaaaaatgaagcaatgtttctggtatccaattactcaaaacatgcatggaatgaactatatccaaagtgttatcnnnnnnnggaaaccgttgtgaaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33162776 |
acaaaaaatgaagcaatgtttctggtatccaattactcaaaacatgcatggaatgaactatatccaaagtgttatcaaaaaacggaaaccgttgtgaaat |
33162677 |
T |
|
| Q |
209 |
actcatgtataaaggaacaacccctcttgaagctatgaagctattaa |
255 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
33162676 |
actcatatataaaggaagaacccctcttgaagctatgaagctattaa |
33162630 |
T |
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