View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_low_28 (Length: 253)

Name: NF18763_low_28
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_low_28
NF18763_low_28
[»] chr3 (5 HSPs)
chr3 (14-253)||(26917130-26917372)
chr3 (56-107)||(8039834-8039885)
chr3 (56-107)||(11665953-11666004)
chr3 (61-123)||(9789111-9789173)
chr3 (57-101)||(25093517-25093561)
[»] chr2 (3 HSPs)
chr2 (57-107)||(34691805-34691855)
chr2 (57-107)||(34714217-34714267)
chr2 (59-107)||(6045918-6045966)
[»] chr8 (4 HSPs)
chr8 (59-99)||(4122251-4122291)
chr8 (56-107)||(11927085-11927136)
chr8 (38-107)||(11944674-11944744)
chr8 (58-107)||(12606830-12606879)
[»] chr5 (1 HSPs)
chr5 (56-107)||(3966512-3966563)
[»] chr4 (1 HSPs)
chr4 (37-107)||(44081557-44081627)
[»] chr1 (2 HSPs)
chr1 (39-96)||(48148018-48148076)
chr1 (57-107)||(52903258-52903308)
[»] scaffold0011 (1 HSPs)
scaffold0011 (58-107)||(240022-240071)
[»] chr7 (2 HSPs)
chr7 (57-106)||(9482944-9482993)
chr7 (24-107)||(35297638-35297722)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 26917372 - 26917130
Alignment:
Q  14 atatatgttctggtatcgaatatgtgtcgtgtttgatatcaaacgacaccgacacatataattacaatgaattgtattat-----tttatcaatttattt 108  Q
    |||| ||| ||| |||||| ||||||||||||| |||||| |||||||| |||||||||||||||| |||||| ||||||     ||||||||||||||     
T  26917372 atatgtgtcctgatatcgattatgtgtcgtgttcgatatcgaacgacactgacacatataattacactgaattatattatattattttatcaatttatta 26917273  T
Q  109 tcaaagtcgacgtatcagtgtatgtgtcatgttcgattttcgtgtcggtatttgtgtttcataagttactattattattgtgagtcaattaagtgcatgt 208  Q
    ||| ||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26917272 tcagagtcggcgtatcagtgtatgtgtcgtgttcggttttcgtgtgggtatttgtgtttcataagttactattattattatgagtcaattaagtgcatgt 26917173  T
Q  209 tctttctactatagacttattaacatctcgataaaatatcatctt 253  Q
    |||||||||  ||||||||||||||||||||||||||||||||||    
T  26917172 tctttctac--tagacttattaacatctcgataaaatatcatctt 26917130  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 8039834 - 8039885
Alignment:
Q  56 acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||||||||||| |||||| ||| ||||| |||| |||||    
T  8039834 acgacaccgacacatataattacactgaattatataattttctcaaattatt 8039885  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 11666004 - 11665953
Alignment:
Q  56 acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||||||||||| | |||||| | |||||||||| |||||    
T  11666004 acgacaccgacacatataattacactaaattgtgtgattttatcaaattatt 11665953  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 9789173 - 9789111
Alignment:
Q  61 accgacacatataattacaatgaattgtattattttatcaatttattttcaaagtcgacgtat 123  Q
    ||||||||||||||||||| | |||| ||||||||||| || ||||| ||||  |||||||||    
T  9789173 accgacacatataattacattaaattatattattttataaaattattatcaatttcgacgtat 9789111  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 25093561 - 25093517
Alignment:
Q  57 cgacaccgacacatataattacaatgaattgtattattttatcaa 101  Q
    ||||||||||||||||||||||| |||||||| | ||||| ||||    
T  25093561 cgacaccgacacatataattacactgaattgtgtgattttctcaa 25093517  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 34691805 - 34691855
Alignment:
Q  57 cgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||| |||||    
T  34691805 cgacaccgacacatataattacactgaattatatgattttatcaaattatt 34691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 34714217 - 34714267
Alignment:
Q  57 cgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    ||||||||||||||||||||||| |||||| ||| |||||||||| |||||    
T  34714217 cgacaccgacacatataattacactgaattatatgattttatcaaattatt 34714267  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 6045918 - 6045966
Alignment:
Q  59 acaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||| |||  |||||||||| |||||||||| |||||    
T  6045918 acaccgacacatataactactttgaattgtatgattttatcaaattatt 6045966  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 4122251 - 4122291
Alignment:
Q  59 acaccgacacatataattacaatgaattgtattattttatc 99  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  4122251 acaccgacacatataattacaatgaattatataattttatc 4122291  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 11927085 - 11927136
Alignment:
Q  56 acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||||||||||| |||||| | | |||||||||| |||||    
T  11927085 acgacaccgacacatataattacactgaattatgtgattttatcaaattatt 11927136  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 11944744 - 11944674
Alignment:
Q  38 tgtcgtgtttgatatcaa-acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||| ||| ||||| |||||||||||||||||||||||| ||| || | | |||||||||| |||||    
T  11944744 tgtcgtgtatgacatcaacacgacaccgacacatataattacactgagttatgtgattttatcaaattatt 11944674  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 12606830 - 12606879
Alignment:
Q  58 gacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||||||||| |||||| ||| ||||| |||| |||||    
T  12606830 gacaccgacacatataattacattgaattatatgattttctcaaattatt 12606879  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 3966563 - 3966512
Alignment:
Q  56 acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||||||||||| |||||||| | ||||| |||| |||||    
T  3966563 acgacaccgacacatataattacactgaattgtgtgattttctcaaattatt 3966512  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 44081557 - 44081627
Alignment:
Q  37 gtgtcgtgtttgatatcaaacgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||||||||||||| | ||| ||| |||||||||||||||| | |||| ||| ||||| |||| |||||    
T  44081557 gtgtcgtgtttgatatgacacggcactgacacatataattacattaaattatatgattttttcaaattatt 44081627  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 48148018 - 48148076
Alignment:
Q  39 gtcgtgtttgatatcaa-acgacaccgacacatataattacaatgaattgtattatttt 96  Q
    |||||||| |||||||| |||||||||||| ||||||||||| |||||| ||| |||||    
T  48148018 gtcgtgttcgatatcaacacgacaccgacatatataattacactgaattatatgatttt 48148076  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 52903308 - 52903258
Alignment:
Q  57 cgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    ||||||||||||||||||||||| |||||| ||| ||||||| || |||||    
T  52903308 cgacaccgacacatataattacactgaattatatgattttattaaattatt 52903258  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 240022 - 240071
Alignment:
Q  58 gacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    ||||||||||||||| |||||| |||||| ||||||||| |||| |||||    
T  240022 gacaccgacacatatgattacattgaattatattattttctcaaattatt 240071  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 9482993 - 9482944
Alignment:
Q  57 cgacaccgacacatataattacaatgaattgtattattttatcaatttat 106  Q
    ||||||||||||||||||||||| |||||||| | ||||| |||| ||||    
T  9482993 cgacaccgacacatataattacactgaattgtgtgattttctcaaattat 9482944  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 35297638 - 35297722
Alignment:
Q  24 tggtatcgaatatgtgtcgtgtttgatatcaa-acgacaccgacacatataattacaatgaattgtattattttatcaatttatt 107  Q
    |||||| ||||||||||  |||| || ||||| |||||||| ||||||||||||| |||||||| | | ||||| |||| |||||    
T  35297638 tggtattgaatatgtgttatgttcgacatcaacacgacaccaacacatataattataatgaattatgtgattttctcaaattatt 35297722  T

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