View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_3 (Length: 647)
Name: NF18763_low_3
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 41459610 - 41459280
Alignment:
| Q |
13 |
tcgaagaaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacatnnnnnnntcagaaaaggaga |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41459610 |
tcgaaaaaaattcaaggctcgcaaagaataaagataaattagtcttaagcaagacaactaagctgaatctagaataacataaaaaaatcagaaaaggaga |
41459511 |
T |
|
| Q |
113 |
aacgcgaaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41459510 |
aacgcgaaacaaaaatatggttcgggaacatgaaccggaaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggt |
41459411 |
T |
|
| Q |
213 |
gaagatgtgacttttgtcacctgttgaaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatca |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41459410 |
gaagatgtgacttttgtcacctgttggaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatca |
41459311 |
T |
|
| Q |
313 |
gacatgttatccaaataatctcttaaattta |
343 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
41459310 |
gacatgttatccaaataatctcttaaattta |
41459280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 343 - 628
Target Start/End: Complemental strand, 41448902 - 41448614
Alignment:
| Q |
343 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448902 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa |
41448803 |
T |
|
| Q |
443 |
atgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttctataacattgccaatgtt |
542 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448802 |
acgcaagccctttggcagcaccaagagcaaccttcagacagaggctccgagagagaggttgaaaatatgagccttctgtttctataacattgccaatgtt |
41448703 |
T |
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| Q |
543 |
aaacaaac---ttctgaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttcc |
628 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41448702 |
aaacaaacttcttctgaaattaaaaactaagggaaaagatgggaaatgaagaataactaacttctaaacaagtgattctccaagcttcc |
41448614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 343 - 628
Target Start/End: Complemental strand, 41459251 - 41458953
Alignment:
| Q |
343 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggctt---cactgtgct |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||||||| |
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| T |
41459251 |
aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctctatatatcactttattttcagcactgtgca |
41459152 |
T |
|
| Q |
440 |
gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctg-------tttctataacat |
532 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||| |||||||| ||| ||| |||| |||| || |
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| T |
41459151 |
gaaatgcaagccctttggcagcgtcaagagcaaccttcagacggaggctccatgaaagaggttggaaatatgatcctcctgtttcaaatttcaataatat |
41459052 |
T |
|
| Q |
533 |
tgccaatgttaaacaaacttct---gaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttcc |
628 |
Q |
| |
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||| |||||||||||||||||| ||| |||||| |||||||||||||||| | ||| ||||||| ||| || ||||||||||||||||||||||| |
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| T |
41459051 |
tgctaatgttaaacaaacttcttccgaagttaaaagctaagggaaaagatgggaaaggaataataactcactcctgaacaagtgattctccaagcttcc |
41458953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 355 - 524
Target Start/End: Complemental strand, 41442457 - 41442285
Alignment:
| Q |
355 |
taaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttca---ctgtgctgaaatgcaagcc |
451 |
Q |
| |
|
|||||| ||| || ||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| | |||| |||||| |||||||||||| |
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| T |
41442457 |
taaaagactaaaagtctacatacggaatccaacaagatatttgaagtcttaaaatctctatatatcactttattttcatcactgtgcagaaatgcaagcc |
41442358 |
T |
|
| Q |
452 |
ctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttc |
524 |
Q |
| |
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| T |
41442357 |
ctttggcagcgtcaagagcaaccttcagacgaaggctccatgaaagaggttgaaaatatgatcctcctgtttc |
41442285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 151 - 337
Target Start/End: Complemental strand, 41442679 - 41442496
Alignment:
| Q |
151 |
aaaatacctgaatctacatattcaggagctgcatatccattatttcctactaacgtgttggtgaagatgtgacttttgtcacctgttgaaccatcccttg |
250 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||| |||| | || | || ||| ||| ||| |||||||||||||||| ||||||| ||| |
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| T |
41442679 |
aaaatacctgtagctagatattcaggagctgcatatccataggttcccattaccctggtgg---agacgtggcttttgtcacctgttggaccatcctttg |
41442583 |
T |
|
| Q |
251 |
ccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgtatcagacatgttatccaaataatctctta |
337 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||| || ||| | | ||| |||||| ||| |||||||||||| |
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| T |
41442582 |
ccagcccgaaatcagaaagctttgcattataatcctgcaatcaaatcaagaaatgtatttcaaccatgttttccgaataatctctta |
41442496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 41449032 - 41448986
Alignment:
| Q |
209 |
tggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagc |
255 |
Q |
| |
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||||| ||| ||||||||| |||||||||| |||||||||||||||| |
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| T |
41449032 |
tggtggagacgtgacttttctcacctgttggaccatcccttgccagc |
41448986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 41448987 - 41448931
Alignment:
| Q |
287 |
gcaaccaaatacaggaatatgtatcagacatgttatccaaataatctcttaaattta |
343 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||||| ||||||||||||| ||||| |
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|
| T |
41448987 |
gcaaccaaatccagaaatatgtatcatacatgttaattaaataatctcttacattta |
41448931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 522
Target Start/End: Complemental strand, 23832695 - 23832613
Alignment:
| Q |
440 |
gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt |
522 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
23832695 |
gaaatgcaaggcctttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
23832613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 440 - 522
Target Start/End: Complemental strand, 23819598 - 23819516
Alignment:
| Q |
440 |
gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt |
522 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
23819598 |
gaaatgcaaggcctttggcagcaccaacagcaaccttcaaccggaggctccaagaaagaggttgaaaatatgagcctcctgtt |
23819516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 442 - 516
Target Start/End: Complemental strand, 23824916 - 23824842
Alignment:
| Q |
442 |
aatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagcct |
516 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
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| T |
23824916 |
aatgcaagacatttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcct |
23824842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 440 - 522
Target Start/End: Complemental strand, 23828848 - 23828766
Alignment:
| Q |
440 |
gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt |
522 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
23828848 |
gaaatgtaaggcctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt |
23828766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 629
Target Start/End: Original strand, 10845211 - 10845241
Alignment:
| Q |
599 |
acttctaaacaagtgattctccaagcttcct |
629 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
10845211 |
acttctaaacaagtgattctccaagcttcct |
10845241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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