View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_low_32 (Length: 238)

Name: NF18763_low_32
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_low_32
NF18763_low_32
[»] chr1 (9 HSPs)
chr1 (1-221)||(52863147-52863364)
chr1 (5-78)||(2295157-2295227)
chr1 (10-47)||(15709914-15709951)
chr1 (6-47)||(10233615-10233656)
chr1 (10-47)||(12763388-12763425)
chr1 (11-47)||(5720992-5721028)
chr1 (10-46)||(28689421-28689457)
chr1 (12-52)||(38001663-38001703)
chr1 (14-76)||(38247397-38247456)
[»] chr2 (4 HSPs)
chr2 (5-47)||(42419854-42419896)
chr2 (7-47)||(28677627-28677667)
chr2 (11-52)||(24100995-24101036)
chr2 (5-45)||(41812061-41812101)
[»] chr7 (3 HSPs)
chr7 (11-47)||(33552819-33552855)
chr7 (10-52)||(29574588-29574630)
chr7 (29-75)||(45338538-45338581)
[»] chr3 (2 HSPs)
chr3 (9-75)||(21367732-21367795)
chr3 (12-78)||(39980797-39980860)
[»] chr8 (2 HSPs)
chr8 (5-52)||(26771326-26771373)
chr8 (5-47)||(30251421-30251463)
[»] chr5 (5 HSPs)
chr5 (5-44)||(10640014-10640053)
chr5 (5-52)||(16457941-16457988)
chr5 (5-55)||(3520638-3520688)
chr5 (10-52)||(38047842-38047884)
chr5 (11-78)||(16937822-16937886)
[»] chr4 (3 HSPs)
chr4 (5-78)||(54426104-54426174)
chr4 (6-52)||(39603132-39603178)
chr4 (9-75)||(20719768-20719831)
[»] chr6 (3 HSPs)
chr6 (14-47)||(29754066-29754099)
chr6 (1-67)||(848046-848109)
chr6 (10-46)||(34939809-34939845)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52863364 - 52863147
Alignment:
Q  1 ttaagaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataagctgctccagtaagagaatccaaac 100  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |||   |||||| ||| ||||||||||||||||||||||||||||||    
T  52863364 ttaagaaaaatgtcataagctttttccataagttctccgaaacagtcacacaaaaa---ttatgccagtagataagctgctccagtaagagaatccaaac 52863268  T
Q  101 agaatagataaggggaagaaagagaagcacacctgacttgtggaagggtaaacaaggaatagccctttacatcaggatgcatgtcaagcacaagtacctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52863267 agaatagataaggggaagaaagagaagcacacctgacttgtggaagggtaaacaaggaatagccctttacatcaggatgcatgtcaagcacaagtacctg 52863168  T
Q  201 taaccttgaaaggcctaatgc 221  Q
    |||||||||||||||||||||    
T  52863167 taaccttgaaaggcctaatgc 52863147  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 2295157 - 2295227
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataagct 78  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| |||   ||||||||||| ||| ||||||||    
T  2295157 gaaaattgtcataagctgttttcataagttctcccaaacagtctcac---aaaacttatgccagtagataagct 2295227  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 15709914 - 15709951
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    |||||||||||| |||||||||||||||||||||||||    
T  15709914 atgtcataagctatttccgtaagttctcccaaacagtc 15709951  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 10233656 - 10233615
Alignment:
Q  6 aaaaatgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  10233656 aaaaatgtcataagctgttttcataagttcttccaaacagtc 10233615  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 12763388 - 12763425
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  12763388 atgtcataagctgttttcgtaagttctccaaaacagtc 12763425  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 5720992 - 5721028
Alignment:
Q  11 tgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    ||||||||||||||| | |||||||||||||||||||    
T  5720992 tgtcataagctgttttcataagttctcccaaacagtc 5721028  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 28689457 - 28689421
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagt 46  Q
    ||||||||||||||||||||||||||||  |||||||    
T  28689457 atgtcataagctgtttccgtaagttctctaaaacagt 28689421  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 38001663 - 38001703
Alignment:
Q  12 gtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    |||||||||||||| | ||||||||||||||||||| ||||    
T  38001663 gtcataagctgttttcataagttctcccaaacagtctcaca 38001703  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 38247397 - 38247456
Alignment:
Q  14 cataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataag 76  Q
    |||||||||||| | |||||||||||||||||| ||||   ||||||||||| ||| ||||||    
T  38247397 cataagctgttttcataagttctcccaaacagtgacac---aaaacttatgccagtagataag 38247456  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 42419854 - 42419896
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  42419854 gaaaaatgtcataagctgttttcgtaagttctcccaaacagtc 42419896  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 28677667 - 28677627
Alignment:
Q  7 aaaatgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  28677667 aaaatgtcataagctgttttcataagttctcccaaacagtc 28677627  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 24100995 - 24101036
Alignment:
Q  11 tgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||    
T  24100995 tgtcataaggtgtttccataagttctcccaaacagtctcaca 24101036  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 41812101 - 41812061
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacag 45  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  41812101 gaaaaatgtcataagctgttttcaaaagttctcccaaacag 41812061  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 33552855 - 33552819
Alignment:
Q  11 tgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33552855 tgtcataagctgttttcgtaagttctcccaaacagtc 33552819  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 29574630 - 29574588
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    |||||||||||||||||| |||||||||| |||||||| ||||    
T  29574630 atgtcataagctgtttccataagttctccgaaacagtctcaca 29574588  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 45338538 - 45338581
Alignment:
Q  29 taagttctcccaaacagtcacacacaaaaacttatgctagtggataa 75  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  45338538 taagttctcccaaacagtctca---aaaaacttatgctagtggataa 45338581  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 21367732 - 21367795
Alignment:
Q  9 aatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataa 75  Q
    ||||||||||||||||| | ||||||||||||||||||| |||   |||||||||||| || |||||    
T  21367732 aatgtcataagctgttttcataagttctcccaaacagtcccac---aaaacttatgctggtagataa 21367795  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 39980797 - 39980860
Alignment:
Q  12 gtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataagct 78  Q
    |||||||||||||| | |||||||||  |||||||| |||   ||||||||||||||| ||||||||    
T  39980797 gtcataagctgttttcataagttctcttaaacagtctcac---aaaacttatgctagtagataagct 39980860  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 26771326 - 26771373
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  26771326 gaaaattgtcataagctgttttcataagttctcccaaacagtctcaca 26771373  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 30251463 - 30251421
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtc 47  Q
    ||||||||  ||||||||||| |||||||||||||||||||||    
T  30251463 gaaaaatgcaataagctgttttcgtaagttctcccaaacagtc 30251421  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 10640014 - 10640053
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaaca 44  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  10640014 gaaaaatgtcataagctgttttcataagttctcccaaaca 10640053  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 16457988 - 16457941
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  16457988 gaaaactgtcataagctgttttcataagttctcccaaacagtctcaca 16457941  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 3520638 - 3520688
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacacacaa 55  Q
    |||||| |||||||| ||||| | ||||||||||||||||||| |||||||    
T  3520638 gaaaaaagtcataagatgttttcataagttctcccaaacagtctcacacaa 3520688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38047884 - 38047842
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    |||||||||| ||||||| |||| |||||||||||||||||||    
T  38047884 atgtcataagttgtttccataagctctcccaaacagtcacaca 38047842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 16937886 - 16937822
Alignment:
Q  11 tgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataagct 78  Q
    ||||||||||||||| | |||||||| ||||||| || |||   ||||||||||||||| ||||||||    
T  16937886 tgtcataagctgttttcataagttcttccaaacactctcac---aaaacttatgctagtagataagct 16937822  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 54426104 - 54426174
Alignment:
Q  5 gaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataagct 78  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| |||   ||||||||||| ||| ||||||||    
T  54426104 gaaaattgtcataagctgttttcctaagttctcccaagcagtctcac---aaaacttatgccagtagataagct 54426174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 39603178 - 39603132
Alignment:
Q  6 aaaaatgtcataagctgtttccgtaagttctcccaaacagtcacaca 52  Q
    |||| ||||||||||||||| | ||||||||||||||||||| ||||    
T  39603178 aaaattgtcataagctgttttcctaagttctcccaaacagtctcaca 39603132  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 20719768 - 20719831
Alignment:
Q  9 aatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgctagtggataa 75  Q
    ||||||||||||||||| | |||||||| ||||| |||| |||   ||||||||||||||| |||||    
T  20719768 aatgtcataagctgttttcttaagttcttccaaatagtcgcac---aaaacttatgctagtagataa 20719831  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 29754099 - 29754066
Alignment:
Q  14 cataagctgtttccgtaagttctcccaaacagtc 47  Q
    |||||||||||| |||||||||||||||||||||    
T  29754099 cataagctgttttcgtaagttctcccaaacagtc 29754066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 848046 - 848109
Alignment:
Q  1 ttaagaaaaatgtcataagctgtttccgtaagttctcccaaacagtcacacacaaaaacttatgcta 67  Q
    |||||||||||||||||||| ||||   |||||||| |||||||||| |||   |||||||||||||    
T  848046 ttaagaaaaatgtcataagcagtttttataagttcttccaaacagtctcac---aaaacttatgcta 848109  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 34939809 - 34939845
Alignment:
Q  10 atgtcataagctgtttccgtaagttctcccaaacagt 46  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  34939809 atgtcataagctgtttccgtaagctctccaaaacagt 34939845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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