View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_low_33 (Length: 238)
Name: NF18763_low_33
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3290282 - 3290502
Alignment:
| Q |
1 |
caccacctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaaggaacaagattggataatccatcaatattagaatttcctttttatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3290282 |
caccacctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaaggaacaagattggataatccagcaatattagaatttcctttttatg |
3290381 |
T |
|
| Q |
101 |
tcacgcaagccagtcaaattggtacaacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3290382 |
tcacgcaagccagtcaaattggtacaacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcct |
3290481 |
T |
|
| Q |
201 |
tagatttttggtgactgtaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3290482 |
tagatttttggtgactgtaat |
3290502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 3288208 - 3288304
Alignment:
| Q |
7 |
ctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatccatcaatattagaatttcctttttatgtca |
103 |
Q |
| |
|
|||| ||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||| |||||||| ||| |||| || |||||||| |||||| |
|
|
| T |
3288208 |
ctcagcaaagcacatactttgaactacataggaccaa-gaaaagaaaaggcaacaagattgaataatccaacaacattaaaaattccttttgatgtca |
3288304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3296214 - 3296289
Alignment:
| Q |
1 |
caccacctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatcca |
75 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || |||||| |||| |||||| || |||||||||||||||| |
|
|
| T |
3296214 |
caccacctcagcaaagcacatactttgagctatatatgaccaagaaaataaaaaggaaaaaagattggataatcca |
3296289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 3288282 - 3288332
Alignment:
| Q |
146 |
attacaaattccttttgatgtcagcaatttaagttggtatgatacgttttt |
196 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
3288282 |
attaaaaattccttttgatgtcagcagttcaaattggtatgatatgttttt |
3288332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University