View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_38 (Length: 224)
Name: NF18763_low_38
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 8205641 - 8205847
Alignment:
| Q |
1 |
aaaactttatagcttccaaattaaattgtacaagaatatagatgaagaagaagttgaaatatttaagtatgaagagatgaataggtaaatatataatggt |
100 |
Q |
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| T |
8205641 |
aaaactttatagcttccaaattaaattgtacaagaatatagatgaagaagaagttgaaatatgtaagtatgaagagatgaataggtaaatatataatggt |
8205740 |
T |
|
| Q |
101 |
agcatttatatatggtttgtggtgggttgacccaataataacttgcacgaccgggtgtgagaaacatgc-aatatactaaagacttcttcatttaatttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8205741 |
agcatttatatatggtttgtggtgggttgacccaataataacttgcacgaccgggtgtgagaaacatgcaaatatactaaagacttcttcatttaatttg |
8205840 |
T |
|
| Q |
200 |
tactttt |
206 |
Q |
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|| |||| |
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| T |
8205841 |
tattttt |
8205847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 8205585 - 8205640
Alignment:
| Q |
8 |
tatagcttccaaattaaattgtacaagaatatagatgaagaagaagttgaaatatt |
63 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205585 |
tatagcttccaaattaaattgtacaagaatatagatgaagaagaagttgaaatatt |
8205640 |
T |
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