View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18763_low_39 (Length: 224)
Name: NF18763_low_39
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5329770 - 5329967
Alignment:
| Q |
1 |
tgattctgacaaattcactatgaattcaaacatacactaaaatgtagcataacattacttttatatatgctttagagaattgaaacattcactaaaatac |
100 |
Q |
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| T |
5329770 |
tgattctgacaaattcactatgaattcaaacatacactaaaatgttgcataacattacttttata--tgctttagagaattgaaacattcactaaaatac |
5329867 |
T |
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| Q |
101 |
aaatgttatgttatatgtaattaaatttgactccctaattggactttaggcactaggagatgcccttactagacaagtggaacttgaaggtcaaattgac |
200 |
Q |
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| T |
5329868 |
aaatgttatgttatatgtaattaaatttgactccctaattggactttaggcactaggagatgaccttactagacaagtggaacttgaaggtcaaattgac |
5329967 |
T |
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Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 54775933 - 54776130
Alignment:
| Q |
1 |
tgattctgacaaattcactatgaattcaaacatacactaaaatgtagcataacattacttttatatatgctttagagaattgaaacattcactaaaatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54775933 |
tgattctgacaaattcactatgaattcaaacatacactaaaatgttgcataacattacttttata--tgctttagagaattgaaacattcactaaaatac |
54776030 |
T |
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| Q |
101 |
aaatgttatgttatatgtaattaaatttgactccctaattggactttaggcactaggagatgcccttactagacaagtggaacttgaaggtcaaattgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54776031 |
aaatgttatgttatatgtaattaaatttgactccctaattggactttaggcactagaagatgcccttactagacaagtggaacttgaaggtcaaattgac |
54776130 |
T |
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