View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18763_low_4 (Length: 605)

Name: NF18763_low_4
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18763_low_4
NF18763_low_4
[»] chr7 (5 HSPs)
chr7 (257-588)||(48593579-48593916)
chr7 (180-252)||(49172351-49172423)
chr7 (1-52)||(49171708-49171759)
chr7 (89-158)||(49172282-49172351)
chr7 (91-159)||(40187634-40187703)
[»] chr1 (4 HSPs)
chr1 (1-52)||(8420544-8420595)
chr1 (96-161)||(48131231-48131297)
chr1 (90-160)||(42045369-42045440)
chr1 (107-159)||(44243867-44243920)
[»] chr5 (5 HSPs)
chr5 (96-161)||(32565516-32565582)
chr5 (90-160)||(6489000-6489071)
chr5 (92-160)||(20370130-20370198)
chr5 (89-152)||(11017177-11017241)
chr5 (105-160)||(27721687-27721743)
[»] chr2 (2 HSPs)
chr2 (90-157)||(34191305-34191373)
chr2 (107-160)||(346138-346192)
[»] chr8 (6 HSPs)
chr8 (106-152)||(41625195-41625242)
chr8 (91-159)||(11708980-11709049)
chr8 (96-160)||(27191751-27191816)
chr8 (96-160)||(39821877-39821942)
chr8 (115-162)||(33445561-33445609)
chr8 (107-162)||(33451363-33451419)
[»] scaffold0012 (1 HSPs)
scaffold0012 (96-161)||(118811-118877)
[»] chr6 (2 HSPs)
chr6 (123-161)||(11129641-11129679)
chr6 (105-152)||(30639438-30639486)
[»] chr4 (3 HSPs)
chr4 (90-159)||(13121538-13121608)
chr4 (91-160)||(22164267-22164337)
chr4 (105-152)||(50442759-50442807)
[»] chr3 (3 HSPs)
chr3 (105-159)||(20949933-20949986)
chr3 (89-158)||(37920994-37921064)
chr3 (91-159)||(48315022-48315091)
[»] scaffold0445 (1 HSPs)
scaffold0445 (89-152)||(4471-4535)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 257 - 588
Target Start/End: Original strand, 48593579 - 48593916
Alignment:
Q  257 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593579 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 48593678  T
Q  357 taaacaaaacaagataaactaaaggcataaacagtaaatataaggaaattccttactttattaatgtaataacaaggtataagaacaagaaattatagct 456  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48593679 taaacaaaacaagataaactaaaggcataaaccgtaaatataaggaaattccttactttattaatgtaataacaaggtataagaacaagaaattataggt 48593778  T
Q  457 ttcttgaaagaat------accaagtataagggtctctataaatgtcaacggaggtacggagttatattatgtgatattagatattgagataactaaact 550  Q
    |||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48593779 ttcttgaaagaatatgcaaaccaagtataagggtctctataaatgtcaacggaggtacggagttatattatgtgatactagatattgagataactaaact 48593878  T
Q  551 aatcctacaattttatgactaaatattgaatatatagt 588  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48593879 aatcctacaattttatgactaaatattgaatatatagt 48593916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 49172351 - 49172423
Alignment:
Q  180 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49172351 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 49172423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 49171759 - 49171708
Alignment:
Q  1 ggtggttactccattcctatttccactcaatttattctacttatttgactat 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49171759 ggtggttactccattcctatttccactcaatttattctacttatttgactat 49171708  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 49172282 - 49172351
Alignment:
Q  89 tccgggatttgaactgcagaccttacatatattagcattattcctgccaactgagctaagctcatgagga 158  Q
    |||||||||| |||||||||||||||||||||||||||| | |||  ||||||||||||||||| |||||    
T  49172282 tccgggatttaaactgcagaccttacatatattagcattgtccctatcaactgagctaagctcacgagga 49172351  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 40187634 - 40187703
Alignment:
Q  91 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 159  Q
    |||| ||||||| ||||||||||||||||||| ||||| | ||| ||||||||| |||||||||||||||    
T  40187634 cggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8420544 - 8420595
Alignment:
Q  1 ggtggttactccattcctatttccactcaatttattctacttatttgactat 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8420544 ggtggttactccattcctatttccactcaatttattctacttatttgactat 8420595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 48131231 - 48131297
Alignment:
Q  96 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 161  Q
    |||||||| |||||||||||||||||| |||||||  |||||||||||| ||| |||| ||||||||    
T  48131231 tttgaactccagaccttacatatattatgcattatctctgccaactgagttaaactcacgaggacaa 48131297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 42045369 - 42045440
Alignment:
Q  90 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | | | |||||||||||||||||| |||||||    
T  42045369 ccggggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 44243920 - 44243867
Alignment:
Q  107 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 159  Q
    |||||||||||||||| ||||| ||||| ||||||||||||| |||| ||||||    
T  44243920 gaccttacatatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 32565582 - 32565516
Alignment:
Q  96 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 161  Q
    |||||||| | |||||||||||||||| ||||||| ||| ||| |||||||||||||| ||||||||    
T  32565582 tttgaacttcggaccttacatatattatgcattatccctaccagctgagctaagctcacgaggacaa 32565516  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 6489071 - 6489000
Alignment:
Q  90 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    ||||| |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  6489071 ccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 20370130 - 20370198
Alignment:
Q  92 gggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    |||||||||||| || |||||  |||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  20370130 gggatttgaact-caaaccttgtatatattatgcattatccctaccaactgagctaagctcacgaggaca 20370198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 11017241 - 11017177
Alignment:
Q  89 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 152  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||| ||| ||||||||||||| ||||    
T  11017241 tccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactca 11017177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 27721687 - 27721743
Alignment:
Q  105 cagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    ||||| || ||||||||| ||||| ||||| |||||||||||||||||| |||||||    
T  27721687 cagactttgcatatattatgcattgttcctaccaactgagctaagctcacgaggaca 27721743  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 34191305 - 34191373
Alignment:
Q  90 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagg 157  Q
    |||||||||||||   |||| |||||||||||| ||||| | ||| |||||||||||||||||||||||    
T  34191305 ccgggatttgaaccttagactttacatatattatgcattgtccctaccaactgagctaagctcatgagg 34191373  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 346138 - 346192
Alignment:
Q  107 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    |||||||||||||||| |||||||||   |||||||||||||||||| |||||||    
T  346138 gaccttacatatattatgcattattcaaaccaactgagctaagctcacgaggaca 346192  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 41625242 - 41625195
Alignment:
Q  106 agaccttacatatatta-gcattattcctgccaactgagctaagctca 152  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  41625242 agaccttacatatattatgcattattcataccaactgagctaagctca 41625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 11709049 - 11708980
Alignment:
Q  91 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 159  Q
    |||| |||||||| | |||||| ||||||||| ||||| | ||| |||||||||||||||||| ||||||    
T  11709049 cggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 27191816 - 27191751
Alignment:
Q  96 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    |||||||| |||||||| ||||||||| | ||| ||| | |||||||||||||||||| |||||||    
T  27191816 tttgaacttcagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 39821942 - 39821877
Alignment:
Q  96 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  39821942 tttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 33445609 - 33445561
Alignment:
Q  115 atatatta-gcattattcctgccaactgagctaagctcatgaggacaac 162  Q
    |||||||| ||||| ||||| |||||||||||||||||| |||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgaggacaac 33445561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 33451363 - 33451419
Alignment:
Q  107 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaac 162  Q
    |||||| ||||||||| ||||||| | | |||||||||||||||||| |||||||||    
T  33451363 gaccttgcatatattatgcattatccataccaactgagctaagctcacgaggacaac 33451419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 118877 - 118811
Alignment:
Q  96 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 161  Q
    |||||||| |||||||||||||| ||| ||||| |||   |||||||||||||||||| ||||||||    
T  118877 tttgaactccagaccttacatattttatgcattgttcaaaccaactgagctaagctcacgaggacaa 118811  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 11129641 - 11129679
Alignment:
Q  123 gcattattcctgccaactgagctaagctcatgaggacaa 161  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  11129641 gcattgttcctaccaactgagctaagctcatgaggacaa 11129679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 30639438 - 30639486
Alignment:
Q  105 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 152  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  30639438 cagaccttgcatatattatgcattattcctaccaactgagctaaactca 30639486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 13121608 - 13121538
Alignment:
Q  90 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 159  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | ||| |||||| ||||||||||| ||||||    
T  13121608 ccggggtttgaacttcagaccttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 22164267 - 22164337
Alignment:
Q  91 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 160  Q
    |||| |||||||  |||||||||||||||||| ||||| ||||| |||||| |||||| |||| |||||||    
T  22164267 cggggtttgaaccccagaccttacatatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 50442759 - 50442807
Alignment:
Q  105 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 152  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  50442759 cagaccttgcatatattatgcattatccctaccaactgagctaagctca 50442807  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 20949986 - 20949933
Alignment:
Q  105 cagaccttacatatattagcattattcctgccaactgagctaagctcatgaggac 159  Q
    ||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||    
T  20949986 cagaccttacatatatt-gcattgttcataccatctgagctaagctcatgaggac 20949933  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 37920994 - 37921064
Alignment:
Q  89 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagga 158  Q
    |||||||||||||| |||||| || ||||||||| ||||||| |||  |||||||||||| |||| |||||    
T  37920994 tccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaactcacgagga 37921064  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 48315022 - 48315091
Alignment:
Q  91 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 159  Q
    ||||||||||||  | |||||| ||||||||| ||||||| | | |||||||||||||||||| ||||||    
T  48315022 cgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgagctaagctcacgaggac 48315091  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 4535 - 4471
Alignment:
Q  89 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 152  Q
    ||||||||| |||||  ||||||||||||||||| |||||||||||  ||||| || ||||||||    
T  4535 tccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctca 4471  T

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