View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18763_low_9 (Length: 455)
Name: NF18763_low_9
Description: NF18763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18763_low_9 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Original strand, 47997084 - 47997516
Alignment:
| Q |
7 |
tcgaagaatattcagcttttgtggtttttggttttggatcggtttggatttgaacacccctaaattattaggtgcaatccattgataaatttcaaaaaat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47997084 |
tcgaaaaatattcagcttttgtggtttttggttttggatcggtttggatttgaacacccctaaattattaggtgcaatccattgataaatttcaaaaaat |
47997183 |
T |
|
| Q |
107 |
acaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttg |
206 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47997184 |
gcaatagaagtatctcttttgtacggttgacatcaacataagagcacataattcacaagagtttaatccttaagtaa-caataaaatcaacttcagtttg |
47997282 |
T |
|
| Q |
207 |
aagtataaagatgcacaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
47997283 |
aagtataaagatgcacaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacatcctttcaaataaaactattacaatgg |
47997382 |
T |
|
| Q |
307 |
caaaacaaaataaagctaaatgtttataatagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttac |
406 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47997383 |
ctaaacaaaataaagttaaatgtttataatagcagacatcttctctcaataagtagctaataacttcaactttaaagtccaaattgatctttgtctttac |
47997482 |
T |
|
| Q |
407 |
gaattcatatggtattggccctgcaaaacaaaaa |
440 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
47997483 |
gaattcatatggtattggccctacaaaacaaaaa |
47997516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 63 - 440
Target Start/End: Complemental strand, 48813786 - 48813412
Alignment:
| Q |
63 |
cccctaaattattaggtgcaatccattgataaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcac |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48813786 |
cccctaaattattaggtgcaatccattgataaatttcaaaaaatgcaatagag-tatctcttttgtacagttgacatcaacataagagcacataattcac |
48813688 |
T |
|
| Q |
163 |
aagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttagttactctcaatacatcatacttgcata |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48813687 |
aagagcttaatccttaagtaa-caataaaatcaacttcagtttgaagtataaagatgcacaatcattccttacttactctcaatacatcatacttgcata |
48813589 |
T |
|
| Q |
263 |
agttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgtttataatagtaggcatcttctctcaacaagtag |
362 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
48813588 |
agtaaatagggtcaacatccttccaaataaaactattacaatagcaaaacaaaataaagctaaatgtttataataactgacatcttctctcaacaagtag |
48813489 |
T |
|
| Q |
363 |
ctaataacttcaactttaaagtccaaattgatctttgtctttacgaattcatatggtattggccctgcaaaacaaaaa |
440 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||| | ||| ||||||||||| |
|
|
| T |
48813488 |
ctaataacttcaactttgaagtccgaatagatctttgtctttatgaattcatatggtatt-gacctacaaaacaaaaa |
48813412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 103 - 335
Target Start/End: Complemental strand, 16047716 - 16047481
Alignment:
| Q |
103 |
aaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcag |
202 |
Q |
| |
|
|||| ||||||| ||| || ||||| ||||||| |||||||||| ||||| ||| ||| ||||| |||||| || |||| |||||||||||||||||| |
|
|
| T |
16047716 |
aaatgcaatagaagtatatcctttgtacagttgaaatcaacataatagcacgtaaatcaaaagagtttaatctttgggtaa-caataaaatcaacttcag |
16047618 |
T |
|
| Q |
203 |
tttgaagtataaagatg---cacaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacat-ccttccaaataaaactat |
298 |
Q |
| |
|
||||||||||||||| | |||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
16047617 |
tttgaagtataaagaagaggcacaataatttcttagttactcacaatacatcatacttgcataagttaatagcgtcaacatcccttccaaagaaaactat |
16047518 |
T |
|
| Q |
299 |
tataatggcaaaacaaaataaagctaaatgtttataa |
335 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
16047517 |
tacaatggcaaaacaaaatcaagctaactgtttataa |
16047481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 12389720 - 12389869
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaa |
191 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
12389720 |
taaatttcaaaaaatgcaatagaagtataacttttgtacagttgacatcaacataagagcacaaaaatcataagagcttaatccttaagt-aacaataaa |
12389818 |
T |
|
| Q |
192 |
atcaacttcagtttgaagtataaagatgcacaatcattccttagttactct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12389819 |
atcaacttcagtttgaagtataaagatgcacaataattccttagttactct |
12389869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 40142918 - 40142781
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaa |
191 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
40142918 |
taaatttcaaaaaattcaatagaagtatatcttttgtacagttgacatcaacataagagcacataaatcataagagcttaatccttaagt-aacaataaa |
40142820 |
T |
|
| Q |
192 |
atcaacttcagtttgaagtataaagatgcacaatcattc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40142819 |
atcaacttcagtttgaagtataaagatgcacaataattc |
40142781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 7700244 - 7700214
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
7700244 |
ttttggatcggtttggatttgaacaccccta |
7700214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 24575310 - 24575340
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24575310 |
ttttggatcggtttggatttgaacaccccta |
24575340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 9279878 - 9279850
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9279878 |
ttttggatcggtttggatttgaacacccc |
9279850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 46252075 - 46252103
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46252075 |
ttttggatcggtttggatttgaacacccc |
46252103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 92 - 411
Target Start/End: Original strand, 27857042 - 27857360
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaa |
191 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||| || ||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
27857042 |
taaatttcaaaaaatgcaataaaagtatatcttttgtacaattgacatcaacataagagcacataaatcataagagtttaatccttaagtaa-caataaa |
27857140 |
T |
|
| Q |
192 |
atcaacttcagtttgaagtataaagatgcacaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaata |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
27857141 |
atcaacttcagtttgaagtataaagatgcacaataattccttagttactctcaatagatcatacttgcataagttaatagagtcaacatccttccaaaga |
27857240 |
T |
|
| Q |
292 |
aaactattataatggcaaaacaaaataaagctaaatgtttataatagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaatt |
391 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27857241 |
aaactattacaatggcaaaacaaaataaagctaaatgtttataatagcagacatcttctctcaacaagtagctaataacttcaactttgaagtccaaatt |
27857340 |
T |
|
| Q |
392 |
gatctttgtctttacgaatt |
411 |
Q |
| |
|
||||| || ||||| ||||| |
|
|
| T |
27857341 |
gatctctgactttatgaatt |
27857360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 323758 - 323789
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
323758 |
ttttggatcggtttggatttgaacacccctaa |
323789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 10286367 - 10286336
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10286367 |
ttttggatcggtttggatttgaacacccctaa |
10286336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 440
Target Start/End: Original strand, 27857371 - 27857402
Alignment:
| Q |
409 |
attcatatggtattggccctgcaaaacaaaaa |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27857371 |
attcatatggtattggccctgcaaaacaaaaa |
27857402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 1575795 - 1575765
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1575795 |
ttttggatcggtttggatttgaacaccccta |
1575765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 36482777 - 36482807
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36482777 |
ttttggatcggtttggatttgaacaccccta |
36482807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 6714344 - 6714373
Alignment:
| Q |
39 |
tttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6714344 |
tttggatcggtttggatttgaacaccccta |
6714373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 121 - 411
Target Start/End: Complemental strand, 29092330 - 29092041
Alignment:
| Q |
121 |
tcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgc |
220 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29092330 |
tcttttgtacagttgacatcaacataaaagcacataaatcataagagcttaatccttaagtaa-caataaaatcaacttcagtttgaagtataaagatgc |
29092232 |
T |
|
| Q |
221 |
acaatcattccttagttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaa |
320 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
29092231 |
acaatagttccttagttactctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaatggcaaaacaaaataaa |
29092132 |
T |
|
| Q |
321 |
gctaaatgtttataatagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||| |
|
|
| T |
29092131 |
gctaaatgtttataatagcaaacatcttctctctacaagtagctaataacttcaactttgaaatccaaattgatctctggctttatgaatt |
29092041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 7608435 - 7608466
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7608435 |
ttttggatcggtttggatttgaacacccctaa |
7608466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 13531252 - 13531222
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13531252 |
ttttggatcggtttggatttgaacaccccta |
13531222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 17523282 - 17523312
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17523282 |
ttttggatcggtttggatttgaacaccccta |
17523312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 21946663 - 21946633
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21946663 |
ttttggatcggtttggatttgaacaccccta |
21946633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 130 - 411
Target Start/End: Original strand, 5931735 - 5932015
Alignment:
| Q |
130 |
cagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
5931735 |
cagttgacatcaacataagagcacataaatcataagagcttaatccttaagtaa-caataaaatcaacttcagtttgaagcataaagatgcccaataatt |
5931833 |
T |
|
| Q |
230 |
ccttagttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5931834 |
ccttagttactctcaatacatcatacttggataagttaatagagtcaacatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgt |
5931933 |
T |
|
| Q |
330 |
ttataatagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
5931934 |
ttataatagcagatatcttctctcaacaagtagctaataacttcaactttgaagtccaaattgatctctgactttatgaatt |
5932015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 136 - 411
Target Start/End: Original strand, 13857753 - 13858027
Alignment:
| Q |
136 |
acatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttag |
235 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13857753 |
acatcaacataagagcatataaatcataagagtttaatccttaagtaa-caataaaatcaacttcagtttgaagcataaagatgcacaataattccttag |
13857851 |
T |
|
| Q |
236 |
ttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgtttataa |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
13857852 |
ttactctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaatgacaaaacaaaataaagctaaatgtttataa |
13857951 |
T |
|
| Q |
336 |
tagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
||| || |||||||||||||||||||| |||||||||||||||| |||| ||||||||||| || ||||| ||||| |
|
|
| T |
13857952 |
tagcagacatcttctctcaacaagtagttaataacttcaactttgaagttcaaattgatctctgactttatgaatt |
13858027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 138 - 411
Target Start/End: Complemental strand, 5937692 - 5937420
Alignment:
| Q |
138 |
atcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttagtt |
237 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
5937692 |
atcaacataagagcacataaaccataaaagcttaatcattaagtaa-caataaaatcaacttcagtttgaagcataaaaatgcacaataattccttagtt |
5937594 |
T |
|
| Q |
238 |
actctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgtttataata |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5937593 |
actctcaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaatggcaaaacaaaataaagctaaatgtttataata |
5937494 |
T |
|
| Q |
338 |
gtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
5937493 |
gcagacatcttctctcaacaagtagctaataacttcaattttgcagtccaaattgatctctggctttatgaatt |
5937420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 13857610 - 13857742
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaa |
191 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||| | |||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
13857610 |
taaatttcaaaaaattcaatagaactatatcttttatacagttgacatcaacataagagcacataaatcataagagcttgatccttaagt-aacaataaa |
13857708 |
T |
|
| Q |
192 |
atcaacttcagtttgaagtataaagatgcacaat |
225 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
13857709 |
atcaacttcagtttgaagcataaagatgcacaat |
13857742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Original strand, 37282790 - 37282821
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
37282790 |
ttttggatcggtttggatttgaacacccctaa |
37282821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 8531178 - 8531207
Alignment:
| Q |
39 |
tttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8531178 |
tttggatcggtttggatttgaacaccccta |
8531207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 136 - 411
Target Start/End: Complemental strand, 34588373 - 34588099
Alignment:
| Q |
136 |
acatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttag |
235 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
34588373 |
acatcaacataagagcacataaatcataagagtttaatccttaagtaa-caataaaatcaacttcattttgaagcataaagatgcacaataattccttag |
34588275 |
T |
|
| Q |
236 |
ttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgtttataa |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
34588274 |
ttactcacaatacatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaataacaaaacaaaataaagctaaatgtttataa |
34588175 |
T |
|
| Q |
336 |
tagtaggcatcttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
||| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
34588174 |
tagcagacatcttctctcaacaagtagttaataacttcaactttgaagtccaaattgatctctgactttatgaatt |
34588099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 247 - 411
Target Start/End: Complemental strand, 17304566 - 17304402
Alignment:
| Q |
247 |
acatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgtttataatagtaggcatc |
346 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||| || |||| |
|
|
| T |
17304566 |
acatcatacttgcataagttaatagagtcaacatccttccaaagaaaactattacaataacaagacaaaataaagctaaatgtttataatagcagacatc |
17304467 |
T |
|
| Q |
347 |
ttctctcaacaagtagctaataacttcaactttaaagtccaaattgatctttgtctttacgaatt |
411 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||| ||||| |
|
|
| T |
17304466 |
ttctctcaacaagtagttaataacttcaactttgaagtccaaattgatctctgactttatgaatt |
17304402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 34588516 - 34588384
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaaacaataaa |
191 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
34588516 |
taaatttcaaaaaattcaatagaagtatatcttttgtatagttgacatcaacataagagcacataaatcataagagctttatccttaagt-aacaataaa |
34588418 |
T |
|
| Q |
192 |
atcaacttcagtttgaagtataaagatgcacaat |
225 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
34588417 |
atcaacttcagtttgaagcataaagatgcacaat |
34588384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 137 - 332
Target Start/End: Complemental strand, 48476061 - 48475869
Alignment:
| Q |
137 |
catcaacataagagcacataattcacaagagcttaatcctt-aagtaaacaataaaatcaacttcagtttgaagtataaagatgcacaatcattccttag |
235 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||| | ||| |||||| ||||||||| ||||||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
48476061 |
catcaacattagagtgtataagtcacaagagcttactgctttaagtaa-caataaaatgaacttcagtttaaagtataaagatgtacaatcattatttag |
48475963 |
T |
|
| Q |
236 |
ttactctcaatacatcatacttgcataagttaatagggtcaacatccttccaaataaaactattataatggcaaaacaaaataaagctaaatgttta |
332 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
48475962 |
ttactctcagca---catacttgcataagttaatagtatcaagatccttccaagtaaaattattataatggtaacacaaaataaagctaaatattta |
48475869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 17304684 - 17304593
Alignment:
| Q |
92 |
taaatttcaaaaaatacaatagacatatctcttttgtgcagttgacatcaacataagagcacataattcacaagagcttaatccttaagtaa |
183 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
17304684 |
taaatttcaaaaaattcaatagaagtatatcttttgtacagttgacatcaacataagagcacataaatcataagagcttaatgcttaagtaa |
17304593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 14461669 - 14461639
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14461669 |
ttttggatcggtttggatttgaacaccccta |
14461639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 24614696 - 24614666
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24614696 |
ttttggatcggtttggatttgaacaccccta |
24614666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 1265068 - 1265037
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1265068 |
ttttggatcggtttggatttgaacacccctaa |
1265037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 4602549 - 4602519
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4602549 |
ttttggatcggtttggatttgaacaccccta |
4602519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 31127404 - 31127434
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31127404 |
ttttggatcggtttggatttgaacaccccta |
31127434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 32906856 - 32906826
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32906856 |
ttttggatcggtttggatttgaacaccccta |
32906826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 291695 - 291665
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
291695 |
ttttggatcggtttggatttgaacaccccta |
291665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 25932124 - 25932094
Alignment:
| Q |
39 |
tttggatcggtttggatttgaacacccctaa |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25932124 |
tttggatcggtttggatttgaacacccctaa |
25932094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 33160468 - 33160438
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33160468 |
ttttggatcggtttggatttgaacaccccta |
33160438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 15441098 - 15441068
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15441098 |
ttttggatcggtttggatttgaacaccccta |
15441068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 16671965 - 16671935
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16671965 |
ttttggatcggtttggatttgaacaccccta |
16671935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 68
Target Start/End: Complemental strand, 18511510 - 18511480
Alignment:
| Q |
38 |
ttttggatcggtttggatttgaacaccccta |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18511510 |
ttttggatcggtttggatttgaacaccccta |
18511480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University