View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18764_high_16 (Length: 313)

Name: NF18764_high_16
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18764_high_16
NF18764_high_16
[»] chr7 (10 HSPs)
chr7 (172-299)||(5433496-5433622)
chr7 (40-135)||(5433362-5433457)
chr7 (25-135)||(5766317-5766427)
chr7 (16-135)||(39065062-39065181)
chr7 (16-135)||(47231840-47231959)
chr7 (16-135)||(25417471-25417590)
chr7 (239-294)||(47231700-47231755)
chr7 (239-299)||(5766165-5766225)
chr7 (239-290)||(39064915-39064966)
chr7 (239-299)||(25417311-25417371)
[»] scaffold0084 (3 HSPs)
scaffold0084 (11-130)||(13575-13694)
scaffold0084 (174-261)||(13736-13822)
scaffold0084 (251-299)||(13863-13911)
[»] chr4 (12 HSPs)
chr4 (12-135)||(34735552-34735675)
chr4 (25-135)||(46094508-46094618)
chr4 (12-130)||(21630808-21630927)
chr4 (31-130)||(53828732-53828831)
chr4 (39-135)||(20038761-20038856)
chr4 (16-135)||(2502898-2503017)
chr4 (239-299)||(53828181-53828241)
chr4 (238-294)||(20038942-20038998)
chr4 (239-299)||(46094710-46094770)
chr4 (239-299)||(2502738-2502798)
chr4 (174-228)||(21630701-21630754)
chr4 (12-71)||(21804871-21804931)
[»] scaffold0516 (1 HSPs)
scaffold0516 (11-130)||(4344-4462)
[»] chr8 (8 HSPs)
chr8 (12-130)||(4140264-4140383)
chr8 (12-130)||(10188350-10188469)
chr8 (174-292)||(4140437-4140553)
chr8 (25-135)||(28845058-28845168)
chr8 (174-292)||(916879-916995)
chr8 (243-292)||(10188567-10188616)
chr8 (239-299)||(28845280-28845340)
chr8 (174-228)||(10188503-10188556)
[»] chr5 (4 HSPs)
chr5 (12-130)||(37299968-37300086)
chr5 (25-135)||(36993251-36993361)
chr5 (239-299)||(37299807-37299867)
chr5 (239-299)||(36993453-36993513)
[»] chr6 (4 HSPs)
chr6 (12-135)||(18884566-18884689)
chr6 (16-135)||(13431349-13431468)
chr6 (238-294)||(18884786-18884842)
chr6 (239-299)||(13431189-13431249)
[»] chr3 (6 HSPs)
chr3 (16-135)||(35872360-35872479)
chr3 (31-135)||(48268275-48268379)
chr3 (16-135)||(52351853-52351972)
chr3 (174-299)||(35872508-35872631)
chr3 (175-284)||(48268427-48268535)
chr3 (239-299)||(52352072-52352132)
[»] chr1 (9 HSPs)
chr1 (12-135)||(22910689-22910812)
chr1 (12-135)||(39625456-39625579)
chr1 (16-135)||(13788356-13788475)
chr1 (16-135)||(25805667-25805786)
chr1 (239-291)||(22910522-22910574)
chr1 (18-91)||(23725524-23725597)
chr1 (238-294)||(39625676-39625732)
chr1 (239-299)||(13788575-13788635)
chr1 (239-299)||(25805507-25805567)
[»] chr2 (7 HSPs)
chr2 (16-135)||(7571987-7572106)
chr2 (31-135)||(16666582-16666686)
chr2 (174-281)||(29457465-29457570)
chr2 (238-292)||(43566291-43566345)
chr2 (239-299)||(7571827-7571887)
chr2 (239-299)||(16666422-16666482)
chr2 (178-218)||(33355604-33355643)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 5433496 - 5433622
Alignment:
Q  172 tagtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaata 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  5433496 tagtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctaaaaaaag-cttaatttctactctctaattattctttctaata 5433594  T
Q  272 aactaatctaatatgtaacttctaacat 299  Q
    ||||||||||||||||||||||||||||    
T  5433595 aactaatctaatatgtaacttctaacat 5433622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 5433362 - 5433457
Alignment:
Q  40 ctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgcatctttagagc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5433362 ctactactatatatgaagcaggctttctaacaaaaattgtgaagcatgacaagtttgaggaggtgatgaacaagatggatgtcgcatctttggagc 5433457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 5766427 - 5766317
Alignment:
Q  25 aaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgc 124  Q
    ||||| |||||||||||||| ||||||||||||||| | ||| | ||||| ||||||||| |||||||||| ||||| ||| ||||||||||| ||||||    
T  5766427 aaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagatgggtgtcgc 5766328  T
Q  125 atctttagagc 135  Q
    |||||| ||||    
T  5766327 atctttggagc 5766317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 39065181 - 39065062
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| ||||||||||||||  |||||||||||||| | ||| | ||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  39065181 ggagactacaaccgttacattgtcctactgttatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagat 39065082  T
Q  116 ggatgtcgcatctttagagc 135  Q
    || |||||||||||| ||||    
T  39065081 gggtgtcgcatctttggagc 39065062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 47231959 - 47231840
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||| || ||||||| ||||| ||| |||||||||    
T  47231959 ggagactaaaaccgttacattgtcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcatggcaagtttaaggagctgaggaacaagat 47231860  T
Q  116 ggatgtcgcatctttagagc 135  Q
    || |||||||| ||| ||||    
T  47231859 gggtgtcgcatatttggagc 47231840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 25417590 - 25417471
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  25417590 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 25417491  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  25417490 gagtgtcgcatctttggagc 25417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 47231755 - 47231700
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttct 294  Q
    |||||||||| |||||||||||||| |||||||||||||||||| | |||||||||    
T  47231755 ttaatttctattctctaattattctatctaataaactaatctaacacgtaacttct 47231700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 5766225 - 5766165
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||    
T  5766225 ttaatttctattctctaatcattctatctaataaactaatctaatacgtaacctctcacat 5766165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 39064966 - 39064915
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaac 290  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  39064966 ttaatttctattctctaatcattctatctaataaactaatctaatacgtaac 39064915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 25417371 - 25417311
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  25417371 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 25417311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 13575 - 13694
Alignment:
Q  11 caaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaac 110  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| ||  | ||||| |||||||| |||||| |||||||||||||||||||| ||||    
T  13575 caaaggaaggctagaaccgctacattgtcctactgctatatatgaatcaaacgttctaccaaaaattatgaagcatgacaagtttgaggaggtgaggaac 13674  T
Q  111 aagatggatgtcgcatcttt 130  Q
    ||||||| |||| |||||||    
T  13675 aagatgggtgtcacatcttt 13694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 13736 - 13822
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattatt 261  Q
    |||||||||||||||| || | |||||||||| |||||||||||| |||||||||         ||||||||||||||||||||||||    
T  13736 gtaaactaaacttgacgcactctaatgcttagaattgtgcctatgtggcacctct-aaaaaaagcttaatttctactctctaattatt 13822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 13863 - 13911
Alignment:
Q  251 ctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    ||||||||||||| |||||||||||||||||||| | ||||||| ||||    
T  13863 ctctaattattctatctaataaactaatctaatacgcaacttctcacat 13911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 34735675 - 34735552
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaaca 111  Q
    |||||||| ||  ||||||||||||| |||||| ||||||||||||||| | ||  ||||||| ||||||||| |||||||||||||||| ||| |||||    
T  34735675 aaagggagactgaaaccgctacattgccctactgctatatatgaagcagacatttcaacaaaatttgtgaagcatgacaagtttgaggagctgaggaaca 34735576  T
Q  112 agatggatgtcgcatctttagagc 135  Q
    ||||||||||||||||||| ||||    
T  34735575 agatggatgtcgcatctttggagc 34735552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 46094508 - 46094618
Alignment:
Q  25 aaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgc 124  Q
    ||||| |||||||||||||| ||||||||||||||| | ||| | ||||| ||||||||| |||||||||| ||||| ||| ||||||||||| ||||||    
T  46094508 aaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagatgggtgtcgc 46094607  T
Q  125 atctttagagc 135  Q
    |||||| ||||    
T  46094608 atctttggagc 46094618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 21630927 - 21630808
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatg-aagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaac 110  Q
    |||||||| ||  |||||||||||||||||||| ||||||||| |||| | ||||| ||||||| ||||||||| |||||||||||||||| | | ||||    
T  21630927 aaagggagactgaaaccgctacattgtcctactgctatatatggaagctgactttccaacaaaatttgtgaagcatgacaagtttgaggagttaaggaac 21630828  T
Q  111 aagatggatgtcgcatcttt 130  Q
    ||||| | ||||||||||||    
T  21630827 aagataggtgtcgcatcttt 21630808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 53828831 - 53828732
Alignment:
Q  31 tacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgcatcttt 130  Q
    ||||||||||||||  |||||||||||||| | ||| ||||||| ||||||||| ||| |||||| ||||| ||| ||||||||||| ||||||||||||    
T  53828831 tacattgtcctactgttatatatgaagcagacattccaacaaaatttgtgaagcatgaaaagtttaaggagctgaggaacaagatgggtgtcgcatcttt 53828732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 20038761 - 20038856
Alignment:
Q  39 cctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgcatctttagagc 135  Q
    |||||| ||||||||||||||| | || |||||||| ||||||||| |||||||||||||||| ||| ||||||||||  |||||||||||| ||||    
T  20038761 cctactgctatatatgaagcagacgtt-taacaaaatttgtgaagcatgacaagtttgaggagttgaggaacaagatgagtgtcgcatctttggagc 20038856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 2503017 - 2502898
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  2503017 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 2502918  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  2502917 gagtgtcgcatctttggagc 2502898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 53828241 - 53828181
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||    
T  53828241 ttaatttctattctctaattattctatctaataaactaatctaatacgtaacttctcacat 53828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 20038942 - 20038998
Alignment:
Q  238 cttaatttctactctctaattattctttctaataaactaatctaatatgtaacttct 294  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||    
T  20038942 cttaatttatactctctaattattctatctaataaactaatctaatacgaaacttct 20038998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 46094710 - 46094770
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||    
T  46094710 ttaatttctattctctaatcattctatctaataaactaatctaatacgtaacctctcacat 46094770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 2502798 - 2502738
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  2502798 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 2502738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 21630754 - 21630701
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctct 228  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||| |||||||||    
T  21630754 gtaaactaaacttgactcactctaatgca-aggattgtgcctatgtggcacctct 21630701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 21804871 - 21804931
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatat-gaagcaggctttctaaca 71  Q
    |||||||| ||  |||||||||||||||||||| |||||||| ||||||| ||||| ||||    
T  21804871 aaagggagactgaaaccgctacattgtcctactgctatatatggaagcagactttccaaca 21804931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 4344 - 4462
Alignment:
Q  11 caaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaac 110  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||| ||| | |||||||||||| | |||||| ||||||||||||||||||||  |||    
T  4344 caaaggaaggctagaatcgctacattgtcctactactatat-tgaatcagacgttctaacaaaaactatgaagcatgacaagtttgaggaggtgagaaac 4442  T
Q  111 aagatggatgtcgcatcttt 130  Q
    ||||||| |||| |||||||    
T  4443 aagatgggtgtcacatcttt 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 4140264 - 4140383
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatg-aagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaac 110  Q
    |||||||| ||  |||||||||||||||||||| ||||||||| |||||| ||||| |||| || ||||||||| |||||||||||||||| ||| ||||    
T  4140264 aaagggagactgaaaccgctacattgtcctactgctatatatggaagcagactttccaacataatttgtgaagcatgacaagtttgaggagctgaggaac 4140363  T
Q  111 aagatggatgtcgcatcttt 130  Q
    ||||||| ||||||||||||    
T  4140364 aagatgggtgtcgcatcttt 4140383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 10188350 - 10188469
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatg-aagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaac 110  Q
    |||||||| ||  |||||||||||||||||||| ||||||||| |||| | ||||| ||||||| ||||||||| |||||||||||||||| ||| ||||    
T  10188350 aaagggagactgaaaccgctacattgtcctactgctatatatggaagcggactttccaacaaaatttgtgaagcatgacaagtttgaggagctgaggaac 10188449  T
Q  111 aagatggatgtcgcatcttt 130  Q
    ||||||| ||||||||||||    
T  10188450 aagatgggtgtcgcatcttt 10188469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 4140437 - 4140553
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaataaa 273  Q
    ||||||||||||||||||| | ||||||  ||||||||||| ||| |||||||||         ||||||||||| |||||||||||||| |||||||||    
T  4140437 gtaaactaaacttgactcactctaatgca-aggattgtgcccatgtggcacctctaaaaaagg-cttaatttctattctctaattattctatctaataaa 4140534  T
Q  274 ctaatctaatatgtaactt 292  Q
    |||||||||||||||||||    
T  4140535 ctaatctaatatgtaactt 4140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 28845058 - 28845168
Alignment:
Q  25 aaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgc 124  Q
    ||||| ||||||||| |||| ||||||||||||||| | ||| | ||||| ||||||||| |||||||||| ||||| ||| ||||||||||  ||||||    
T  28845058 aaccgttacattgtcatactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagatgagtgtcgc 28845157  T
Q  125 atctttagagc 135  Q
    |||||| ||||    
T  28845158 atctttggagc 28845168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 916995 - 916879
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaataaa 273  Q
    ||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||         ||||||||||| |||| ||||||||  | |||||||    
T  916995 gtaaactaaacttgactcactctaatg-ttaggattgtgcctatgtggcacctctaaaaaaga-cttaatttctattctcgaattattcaatttaataaa 916898  T
Q  274 ctaatctaatatgtaactt 292  Q
    |||||||||||||||||||    
T  916897 ctaatctaatatgtaactt 916879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 10188567 - 10188616
Alignment:
Q  243 tttctactctctaattattctttctaataaactaatctaatatgtaactt 292  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  10188567 tttctattctctaattattctatctaataaactaatctaatatgtaactt 10188616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 28845280 - 28845340
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  28845280 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 28845340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 10188503 - 10188556
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctct 228  Q
    ||||||||||||||||||| | ||||||  ||||||||||||||| |||||||||    
T  10188503 gtaaactaaacttgactcactctaatgca-aggattgtgcctatgtggcacctct 10188556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 37300086 - 37299968
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaaca 111  Q
    |||||||| ||  ||| ||||||||| |||||| ||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||| ||| |||||    
T  37300086 aaagggagactgaaactgctacattgccctactgctatatatgaagcagacattccaacaaaatttgtgaagcatgacaagtttgaggagctgaggaaca 37299987  T
Q  112 agatggatgtcgcatcttt 130  Q
    |||||| ||||||||||||    
T  37299986 agatgggtgtcgcatcttt 37299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 36993251 - 36993361
Alignment:
Q  25 aaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgc 124  Q
    ||||| |||||||||||||| ||||||||||||||| | ||| | ||||| ||||||||| |||||||||| ||||| ||| ||||||||||| ||||||    
T  36993251 aaccgttacattgtcctactgctatatatgaagcagacgttccagcaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagatgggtgtcgc 36993350  T
Q  125 atctttagagc 135  Q
    |||||| ||||    
T  36993351 atctttggagc 36993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 37299867 - 37299807
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  37299867 ttaatttctattctctaattattctatctaataaactaatctaatatgtaatttctcacat 37299807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 36993453 - 36993513
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||    
T  36993453 ttaatttctattctctaatcattctatctaataaactaatctaatacgtaacctctcacat 36993513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 18884566 - 18884689
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaaca 111  Q
    |||||| |||| ||||||||||||||||||| | ||||||| ||||||| | |||  |||||||||||||||| |||||||||||||||| |||  ||||    
T  18884566 aaagggtggctggaaccgctacattgtcctattgctatatacgaagcagacgttcctacaaaaattgtgaagcatgacaagtttgaggagttgagaaaca 18884665  T
Q  112 agatggatgtcgcatctttagagc 135  Q
    |||||| |||| ||||||| ||||    
T  18884666 agatgggtgtcacatctttggagc 18884689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 13431468 - 13431349
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  13431468 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 13431369  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  13431368 gagtgtcgcatctttggagc 13431349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 18884786 - 18884842
Alignment:
Q  238 cttaatttctactctctaattattctttctaataaactaatctaatatgtaacttct 294  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  18884786 cttaatttttactctttaattattctatctaataaactaatctaatacgtaacttct 18884842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 13431249 - 13431189
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  13431249 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 13431189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 35872360 - 35872479
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| ||||||||||||  |||||||||||||||| | ||| ||||||| ||||||||| |||||||||| ||||| ||| |||||||||    
T  35872360 ggagactaaaaccgttacattgtcctatcactatatatgaagcagacgttccaacaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagat 35872459  T
Q  116 ggatgtcgcatctttagagc 135  Q
    || |||||||||||| ||||    
T  35872460 gggtgtcgcatctttggagc 35872479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 48268275 - 48268379
Alignment:
Q  31 tacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgcatcttt 130  Q
    |||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||| |||||||||| ||||| ||| ||||||||||  ||||||||||||    
T  48268275 tacattgtcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcatgacaagtttaaggagctgaggaacaagatgagtgtcgcatcttt 48268374  T
Q  131 agagc 135  Q
     ||||    
T  48268375 ggagc 48268379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 52351853 - 52351972
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  52351853 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 52351952  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  52351953 gagtgtcgcatctttggagc 52351972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 35872508 - 35872631
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaataaa 273  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||| | |||||||          |||||||||| |||||||| ||||| |||||||||    
T  35872508 gtaaactaaacttgactaactctaatgct-aggattgtgcctatgcgacacctctaaaaaaggt-ttaatttctattctctaatcattctatctaataaa 35872605  T
Q  274 ctaatctaatatgtaacttctaacat 299  Q
    ||||||||||| ||||| ||| ||||    
T  35872606 ctaatctaatacgtaacctctcacat 35872631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 48268427 - 48268535
Alignment:
Q  175 taaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaataaac 274  Q
    |||||||||||||||| | | ||||||| ||||||||||||||| | |||||||          ||||||| || |||||||| ||||| ||||||||||    
T  48268427 taaactaaacttgactaactctaatgct-aggattgtgcctatgtgacacctctaaaaaaatgtttaatttatattctctaatcattctatctaataaac 48268525  T
Q  275 taatctaata 284  Q
    ||||||||||    
T  48268526 taatctaata 48268535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 52352072 - 52352132
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  52352072 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 52352132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 22910812 - 22910689
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaaca 111  Q
    |||||||| ||  |||||||||||| ||||||| ||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||| ||| |||||    
T  22910812 aaagggagactgaaaccgctacattatcctactgctatatatgaagcagacgttccaacaaaatttgtgaagcatgacaagtttgaggagttgaggaaca 22910713  T
Q  112 agatggatgtcgcatctttagagc 135  Q
    |||||  || ||||||||| ||||    
T  22910712 agatgagtgccgcatctttggagc 22910689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 39625456 - 39625579
Alignment:
Q  12 aaagggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaaca 111  Q
    |||||| |||| ||||||||||||||||||| | ||||||| ||||||| | |||  |||||||||||||||| |||||||||||||||| |||  ||||    
T  39625456 aaagggtggctggaaccgctacattgtcctattgctatatacgaagcagacgttcctacaaaaattgtgaagcatgacaagtttgaggagttgagaaaca 39625555  T
Q  112 agatggatgtcgcatctttagagc 135  Q
    |||||| |||| ||||||| ||||    
T  39625556 agatgggtgtcacatctttggagc 39625579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 13788356 - 13788475
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  13788356 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 13788455  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  13788456 gagtgtcgcatctttggagc 13788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 25805786 - 25805667
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  25805786 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 25805687  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  25805686 gagtgtcgcatctttggagc 25805667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 22910574 - 22910522
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaact 291  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  22910574 ttaatttctattctctaattattctatctaataaactaatctaatatgtaact 22910522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 23725597 - 23725524
Alignment:
Q  18 aggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaa 91  Q
    |||||||||||| |||||||||||||| |||||||||||  || | ||||| |||||||| |||||| ||||||    
T  23725597 aggctagaaccgttacattgtcctactgctatatatgaatgagacgttctaccaaaaattatgaagcatgacaa 23725524  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 39625676 - 39625732
Alignment:
Q  238 cttaatttctactctctaattattctttctaataaactaatctaatatgtaacttct 294  Q
    ||||| || |||||| |||||||||| |||||||||||||||||||| |||||||||    
T  39625676 cttaacttttactctttaattattctatctaataaactaatctaatacgtaacttct 39625732  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 13788575 - 13788635
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  13788575 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 13788635  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 25805567 - 25805507
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  25805567 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 25805507  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 7572106 - 7571987
Alignment:
Q  16 ggaggctagaaccgctacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagat 115  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | |||||||||    
T  7572106 ggagactacaaccgttacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagat 7572007  T
Q  116 ggatgtcgcatctttagagc 135  Q
    |  |||||||||||| ||||    
T  7572006 gagtgtcgcatctttggagc 7571987  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 16666686 - 16666582
Alignment:
Q  31 tacattgtcctactactatatatgaagcaggctttctaacaaaaattgtgaagcgtgacaagtttgaggaggtgatgaacaagatggatgtcgcatcttt 130  Q
    |||||||||||||| ||||||||||||||| | ||  | ||||| ||||||||| |||||||||| ||||| | | ||||||||||  ||||||||||||    
T  16666686 tacattgtcctactgctatatatgaagcagacgtttcagcaaaatttgtgaagcatgacaagtttaaggagataaggaacaagatgagtgtcgcatcttt 16666587  T
Q  131 agagc 135  Q
     ||||    
T  16666586 ggagc 16666582  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 29457465 - 29457570
Alignment:
Q  174 gtaaactaaacttgactcattttaatgcttaggattgtgcctatgaggcacctctnnnnnnnnncttaatttctactctctaattattctttctaataaa 273  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||  |||||||||         ||||||||||| |||||||||||| | |||||||||    
T  29457465 gtaaactaaacttgactcactctaatgct-aggattgtgcctatatggcacctctaaaaaagg-cttaatttctattctctaattattatatctaataaa 29457562  T
Q  274 ctaatcta 281  Q
    ||||||||    
T  29457563 ctaatcta 29457570  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 43566291 - 43566345
Alignment:
Q  238 cttaatttctactctctaattattctttctaataaactaatctaatatgtaactt 292  Q
    ||||||||||| |||||||||||| | ||||||||||||||||| || |||||||    
T  43566291 cttaatttctattctctaattattttatctaataaactaatctattacgtaactt 43566345  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 7571887 - 7571827
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  7571887 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 7571827  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 16666482 - 16666422
Alignment:
Q  239 ttaatttctactctctaattattctttctaataaactaatctaatatgtaacttctaacat 299  Q
    |||||||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| ||||    
T  16666482 ttaatttctattctctaatcattctatttaataaactaatctaatacgtaacctctcacat 16666422  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 33355643 - 33355604
Alignment:
Q  178 actaaacttgactcattttaatgcttaggattgtgcctatg 218  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  33355643 actaaacttgactcattctaatg-ttaggattgtgcctatg 33355604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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