View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_high_24 (Length: 238)
Name: NF18764_high_24
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 45024975 - 45024776
Alignment:
| Q |
16 |
cacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatc |
115 |
Q |
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| T |
45024975 |
cacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatc |
45024876 |
T |
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| Q |
116 |
tggtcaaaacatttatgcatataatataaatgcaatgattactaaataatcctccctctgaattggcatataaacaaatttggactgaattgtgcatatt |
215 |
Q |
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| T |
45024875 |
tgatcaaaacatttatgcatataatataaatgcaatgattactatataatcctccctctgaattggcatataaacaaatttggactgaattgtgcatatt |
45024776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 30471780 - 30471858
Alignment:
| Q |
23 |
atggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
101 |
Q |
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| T |
30471780 |
atggctctctgcaagtgtattcccaccatatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 30437691 - 30437753
Alignment:
| Q |
40 |
tattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
102 |
Q |
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| T |
30437691 |
tattccaaccatatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 30381373 - 30381453
Alignment:
| Q |
22 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
102 |
Q |
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| T |
30381373 |
catggctctttgtgtgtatatgccaaccatatgatattgctttgctccatatgcttgaccacaaaatgtgtctagtgcact |
30381453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 30502739 - 30502812
Alignment:
| Q |
22 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtcca |
95 |
Q |
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| T |
30502739 |
catggctctttgcatgtgtatgcctagcatgcggtactgctttgcgccatatgactggccacataatgtgtcca |
30502812 |
T |
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