View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18764_high_27 (Length: 230)

Name: NF18764_high_27
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18764_high_27
NF18764_high_27
[»] chr7 (2 HSPs)
chr7 (17-221)||(38862344-38862548)
chr7 (34-146)||(38830698-38830810)
[»] chr4 (3 HSPs)
chr4 (17-194)||(19719911-19720088)
chr4 (17-194)||(19840505-19840682)
chr4 (17-194)||(19892802-19892979)
[»] chr1 (3 HSPs)
chr1 (22-149)||(30623876-30624003)
chr1 (22-149)||(30629507-30629634)
chr1 (31-149)||(33042550-33042668)
[»] chr2 (1 HSPs)
chr2 (34-168)||(4420143-4420277)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 38862548 - 38862344
Alignment:
Q  17 atgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38862548 atgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttga 38862449  T
Q  117 atctcttatctccgccgcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaatcggcggcggtggaggtggtgat 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38862448 atctcttatctccgcggcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaatcggcggcggtggaggtggtgat 38862349  T
Q  217 gatgt 221  Q
    |||||    
T  38862348 gatgt 38862344  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 38830810 - 38830698
Alignment:
Q  34 aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccg 133  Q
    ||||||||||| ||||||||||||||||||||||| || || || ||||||||||||||||| | |||||| ||||||||||  || |||||||| || |    
T  38830810 aaagctgcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaatccacacacgaacaccatttcttgttgtgtcccttatctctgctg 38830711  T
Q  134 caaattttcccca 146  Q
    | |||||||||||    
T  38830710 cgaattttcccca 38830698  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 19719911 - 19720088
Alignment:
Q  17 atgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttga 116  Q
    |||||||||||| | ||||||| ||||| || ||||||||||||||| |||||||||||| ||||||||||| ||| |||||| | ||||||||||||||    
T  19719911 atgaacctcttgctaaaaaagcagcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactctagccccttttcttgttga 19720010  T
Q  117 atctcttatctccgccgcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaat 194  Q
     || |||||||||||||| ||||| |||||||||||  ||| ||||||||||||| | ||| | |||||||| |||||    
T  19720011 gtcccttatctccgccgcgaatttcccccatggccttcttcgtactcctctaaatacccttgtgttactttctttaat 19720088  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 19840682 - 19840505
Alignment:
Q  17 atgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttga 116  Q
    |||||||||||| | || |||| ||||| || ||||||||||||||| |||||||||||| ||||||||||| ||| |||||| | ||||||||||||||    
T  19840682 atgaacctcttgctaaataagcggcttggtcgtaagctaaagcagcttcttcggccgtgttgaatgttccaagccatactctagccccttttcttgttga 19840583  T
Q  117 atctcttatctccgccgcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaat 194  Q
     || |||||||||||||| ||||| ||||||||||| |||||||  ||||||||  | ||||| |||||||| |||||    
T  19840582 gtcccttatctccgccgcgaatttcccccatggccttgttcttatacctctaaacacccttttattactttctttaat 19840505  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 19892802 - 19892979
Alignment:
Q  17 atgaacctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttga 116  Q
    |||||||| ||| ||||||||| ||||| |||||||||||||| ||| ||||  |||||| ||||||||||| ||| || ||| | ||||||||||| ||    
T  19892802 atgaaccttttgctgaaaaagcggcttggtcataagctaaagcggcttcttcctccgtgttgaatgttccaagccataccctagccccttttcttgtcga 19892901  T
Q  117 atctcttatctccgccgcaaattttccccatggcctagttcttactcctctaaatgctcttttcttactttccttaat 194  Q
     || |||||||| ||||| ||||| |||||||||||  ||| |||||||||||   | ||||| |||||||| |||||    
T  19892902 gtcccttatctcggccgcgaatttcccccatggccttcttcgtactcctctaagcacccttttgttactttctttaat 19892979  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 30623876 - 30624003
Alignment:
Q  22 cctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctc 121  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| || || || ||||| |||||||| ||||||||||||||||||||||| ||||    
T  30623876 cctcttgttgataaagctgcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactctaacaccttttcttgttgagtctc 30623975  T
Q  122 ttatctccgccgcaaattttccccatgg 149  Q
    |||| ||||| || ||||||||||||||    
T  30623976 ttatttccgctgcgaattttccccatgg 30624003  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 30629507 - 30629634
Alignment:
Q  22 cctcttgttgaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctc 121  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||| ||||| ||||    
T  30629507 cctcttgttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctc 30629606  T
Q  122 ttatctccgccgcaaattttccccatgg 149  Q
    |||| ||||| || ||||||||||||||    
T  30629607 ttatttccgctgcgaattttccccatgg 30629634  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 33042668 - 33042550
Alignment:
Q  31 gaaaaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccg 130  Q
    ||||||||||||||||||||||| |||||||| ||||| ||  | || || ||||| | |||||| || |  || || || || |||||||||||||| |    
T  33042668 gaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctcattccattcctcgtcgaatctcttatctctg 33042569  T
Q  131 ccgcaaattttccccatgg 149  Q
    | |||||||| ||||||||    
T  33042568 ctgcaaatttcccccatgg 33042550  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 4420143 - 4420277
Alignment:
Q  34 aaagctgcttgatcataagctaaagcagctgcttcggccgtgtcgaatgttccaatccacactctaacaccttttcttgttgaatctcttatctccgccg 133  Q
    ||||| |||| |||||||||||||||||||  ||| || || || ||||| |||| ||| |||||   ||||||  ||| ||||||||| || || || |    
T  4420143 aaagcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactcttgaacctttctttgatgaatctctaatttcagctg 4420242  T
Q  134 caaattttccccatggcctagttcttactcctcta 168  Q
    || ||||||||||||||||  | ||||||||||||    
T  4420243 catattttccccatggccttctccttactcctcta 4420277  T

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