View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18764_high_4 (Length: 462)
Name: NF18764_high_4
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 8261155 - 8260714
Alignment:
| Q |
10 |
ataatacttgatgtactctcttaaagaaacttgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcacgcaccaaata |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8261155 |
ataatacttgatgtactctcttaaagaaaattgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcaggcaccaaata |
8261056 |
T |
|
| Q |
110 |
agcaatgaaaaagacaaacgaaacaacattttgttttcaattaacaagtgcccaaagcagccacaaatga--------annnnnnnnnccaaagtggtcc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| | | |||||||||||| |
|
|
| T |
8261055 |
agcaatgaaaaagacaaacgaaacaacattttgattctaattaacaagtgttcaaagcagccacaaattattttttttatttttttttccaaagtggtcc |
8260956 |
T |
|
| Q |
202 |
ctttatgttttccttgctcaccaagcaatttgactattatcagatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8260955 |
ctttatgttttccttggtcaccaagcaatttgactattatcatatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
8260856 |
T |
|
| Q |
302 |
taaatcatttcagcttttcacacttccataaacagaaaaccctcttcaaagtgcaaattaaatcactttttgatggctttgatttcatccttcttaagtt |
401 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8260855 |
taaatcatttcagctttccacacttacataaacagaaaaccctcttcaaagtgcaaattaaatcactttttgatggctttgatttcatccttcttaagtt |
8260756 |
T |
|
| Q |
402 |
gctttggccattctttagactcatcatctcaagtttctgatt |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8260755 |
gctttggccattctttagactcatcatctcaagtttctgatt |
8260714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 250 - 443
Target Start/End: Complemental strand, 8265874 - 8265680
Alignment:
| Q |
250 |
atatgatatctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaacagaaaaccctcttca |
349 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |||||| ||||| |
|
|
| T |
8265874 |
atatgatgtctataaatggatcaagttaattacatgaagttcaacccacaactaaatcatttcagctttccacacttacataaacaagaaacccacttca |
8265775 |
T |
|
| Q |
350 |
aagtgcaaattaaatcact-ttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgatt |
443 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8265774 |
aagtgcaaattaaatcactttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgatt |
8265680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 149 - 443
Target Start/End: Complemental strand, 8258915 - 8258607
Alignment:
| Q |
149 |
attaacaagtgcccaaagcagccacaaatgaannnnnnnnnccaaagtggtccc-tttatgttttccttgctcaccaagcaatttgactattatcagatc |
247 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| | |||| || ||||||||||||||||| |||| ||| |
|
|
| T |
8258915 |
attaacaagtgtccaaagcagccacaaatgaattttttt---caaagtggtcccatttaggttctgcttggtcgccaagcaatttgactatcatcatatc |
8258819 |
T |
|
| Q |
248 |
tcatatgatat------------ctataaatagatcaagtta---actacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataa |
332 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
8258818 |
tcatatgatatgaaatgataactctataaatagatcaagttattaattacatgaagttcaacccacaactaaatcatttcagctttgcacacttacataa |
8258719 |
T |
|
| Q |
333 |
acagaaaaccctcttcaaagtgcaaattaaatcact-ttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctc |
431 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
8258718 |
acaaaaaacccacttcaaagtgcaaattaaatcactttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctc |
8258619 |
T |
|
| Q |
432 |
aagtttctgatt |
443 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8258618 |
aagtttctgatt |
8258607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 442
Target Start/End: Complemental strand, 8350220 - 8350129
Alignment:
| Q |
351 |
agtgcaaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| |
|
|
| T |
8350220 |
agtgcaaattaaatcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8350129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 443
Target Start/End: Complemental strand, 8352964 - 8352872
Alignment:
| Q |
351 |
agtgcaaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgatt |
443 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| || || | ||||||||| | ||||| ||||||| |||||||||| ||||| |
|
|
| T |
8352964 |
agtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgatt |
8352872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 8253046 - 8252975
Alignment:
| Q |
371 |
ttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat |
442 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| |
|
|
| T |
8253046 |
ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat |
8252975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 8356508 - 8356439
Alignment:
| Q |
374 |
atggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgatt |
443 |
Q |
| |
|
||||||||||||| | | ||||| | ||||||||| | |||| | |||||||||||||||||||||||| |
|
|
| T |
8356508 |
atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgatt |
8356439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 8265949 - 8265901
Alignment:
| Q |
191 |
caaagtggtccc-tttatgttttccttgctcaccaagcaatttgactat |
238 |
Q |
| |
|
|||||||||||| |||||||| |||||| || ||||||||||||||||| |
|
|
| T |
8265949 |
caaagtggtcccatttatgttctccttggtcgccaagcaatttgactat |
8265901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University