View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_high_6 (Length: 450)
Name: NF18764_high_6
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 26074022 - 26074461
Alignment:
| Q |
15 |
aatatctcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacact |
114 |
Q |
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| T |
26074022 |
aatatctcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacact |
26074121 |
T |
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| Q |
115 |
tagaccttgctaataataataacaacaacga---------taatagtaatagacatcagacaacaattatcgtatcagacatcaaacacgtttttatatg |
205 |
Q |
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| T |
26074122 |
tagaccttgctaataataataataacaacaacaataataataatagtaatatacatcagacaacaattatcgtatcaaacatcaaacacgttttcatatg |
26074221 |
T |
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| Q |
206 |
aagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaattcaagttaattttcattttttaactgatttgtt |
305 |
Q |
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| T |
26074222 |
aagtgtcggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtctttttaattcaagttaatttttattttttaactgatttgtt |
26074321 |
T |
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| Q |
306 |
agttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcaatacattgttcac |
405 |
Q |
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| T |
26074322 |
agttgatgaaaatacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcatatcctggttcat |
26074421 |
T |
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| Q |
406 |
aacaatatttgtcattgcaagatccactggactctctgct |
445 |
Q |
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| T |
26074422 |
gacaacatctgttattacaagatccactggactctatgct |
26074461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 173 - 445
Target Start/End: Original strand, 26093831 - 26094102
Alignment:
| Q |
173 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
272 |
Q |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
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| Q |
273 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggta |
372 |
Q |
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| T |
26093931 |
tcaagttaatttttatttt-taactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggta |
26094029 |
T |
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| Q |
373 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctctgct |
445 |
Q |
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| T |
26094030 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgct |
26094102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 26093695 - 26093786
Alignment:
| Q |
15 |
aatatctcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacc |
106 |
Q |
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| T |
26093695 |
aatatcgcccacttttccttcaaaatgcacctatagataccaaactcaacaatattagttagttgatatcagaattttcctttgacaaaacc |
26093786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 26105377 - 26105527
Alignment:
| Q |
289 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
387 |
Q |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
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| Q |
388 |
tttcaatacattgttcacaacaatatttgtcattgcaagatccactggact |
438 |
Q |
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| T |
26105477 |
tttcaattcctggttcatgacaatatctgtcattacaagatccactggact |
26105527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 26105103 - 26105163
Alignment:
| Q |
15 |
aatatctcccacttttccttcaaaatgcacctata-aataccaaactcaaccatattagtt |
74 |
Q |
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| T |
26105103 |
aatatctcccactttaccttcaaaatgtacctatattttaacaaactcaaccatatcagtt |
26105163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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