View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18764_high_7 (Length: 394)
Name: NF18764_high_7
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 383
Target Start/End: Complemental strand, 10680554 - 10680196
Alignment:
| Q |
25 |
tcctgatgctatgaatgctacaaattcaccaagctcaactcttatgtaagcaaaagaaccacctataataaaagaaatgttagtcaaaggttttaccaac |
124 |
Q |
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| T |
10680554 |
tcctgatgctatgaatgctacaaattcaccaagttcaactcttatgtaagcaaaagaaccacctataataaaagaaatgttagtcaaaggttttgccaac |
10680455 |
T |
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| Q |
125 |
atttttcagttgttgctaaaagagacttgaacaaataacatacaaaaaattacgtaccagccacagggatttccacagcaaattcagtgtaacaaaaaac |
224 |
Q |
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| T |
10680454 |
atttttcagttgttgctaaaagagacttgaacaaataacatacaaaaaattacgtaccagccacagggatttccacagcaaattcagtgtaacaaaaaac |
10680355 |
T |
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| Q |
225 |
agacaacatagctgaaattcccgagacaatatatgataaaaccacagcaggtcccacagtgttcttaacttcaagtcctgttagtacaaaaatacccgaa |
324 |
Q |
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| T |
10680354 |
agacaacatagcagaaatgcccgagacaatatatgataaaaccacagcaggtcccacagtgttcttaacttcaagtcctgttagtacaaaaatacctgaa |
10680255 |
T |
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| Q |
325 |
ccaatgacacttcccatgccaaaccatatcaagtcccaccaagacagtgttttcttcat |
383 |
Q |
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| T |
10680254 |
ccaatgacacttcccatgccaaaccatatcaagtcccaccaagacagtgttttcttcat |
10680196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 37135667 - 37135622
Alignment:
| Q |
187 |
acagggatttccacagcaaattcagtgtaacaaaaaacagacaaca |
232 |
Q |
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| T |
37135667 |
acaggaatttccactgcaaattcggtgtagcaaaaaacagacaaca |
37135622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 37113542 - 37113634
Alignment:
| Q |
295 |
tcaagtcctgttagtacaaaaatacccgaaccaatgacacttcccatgccaaaccatatcaagtcccaccaagacagtgttttcttcatctca |
387 |
Q |
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| T |
37113542 |
tcaagtccggtaagcacaaatattccagaaccaatgacggcgcccataccgaaccacatcaagtcccaccaattcagtgtcttcttcatctca |
37113634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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