View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18764_high_8 (Length: 370)
Name: NF18764_high_8
Description: NF18764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18764_high_8 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 27456250 - 27455904
Alignment:
| Q |
1 |
attaaaattcggctatgtttacgcaatcccataacttcaatatgaaaaagacactctagagtaattgatcaaaacaagagaagcttagaaaatcagaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27456250 |
attaaaattcggctatgtttacgcaatcccataagttcaatatgaaaaagacactctagagtaattgatcaaaacaagagaagctttgaaaatcagaatt |
27456151 |
T |
|
| Q |
101 |
taattataattttcagctattacacgaacttcataaactattcacttcaatactgacacacctctctccttatttaccacagaacacaaacagaaacaat |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27456150 |
----------------------caccaacttcataaactattcacttcaatattgacacacctctctgcttatttaccacagaacacaaacagaaacaat |
27456073 |
T |
|
| Q |
201 |
gtagaacataaaaaatatacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactttttgtgcttat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27456072 |
gtagaacataaaaaa-atacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactttttgtgcttat |
27455974 |
T |
|
| Q |
301 |
acactgccctcaatgctgtcttttggttctgtgaaatcactgtcaaaacctgtgcgatgttaagccgaac |
370 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27455973 |
acgctgccctcaatgctgtcttttggttctgtgaaatcactgtcaaaacctgtgcgatgttaagccgaac |
27455904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 208 - 370
Target Start/End: Original strand, 23173340 - 23173502
Alignment:
| Q |
208 |
ataaaaaatatacctgattcttagtgagacgtcttctaatagctctggtctttttgggacgaagatccaaaggcaagtactttttgtgcttatacactgc |
307 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||| |||||| || | |
|
|
| T |
23173340 |
ataaaaaatgtacctgatgcttagtgaggcgtcttctaatagctcttgtcttcttgggacggagatccaacggcaagtacttcttggacttataagcttc |
23173439 |
T |
|
| Q |
308 |
cctcaatgctgtcttttggttctgtgaaatcactgtcaaaacctgtgcgatgttaagccgaac |
370 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
23173440 |
ccttaatgctgtcttttgcttctgtgaaatcacagtcaagacctgtgcgatgttgagccgaac |
23173502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University